I'm using a FAt32 standard filesystem for my Windows XP... though there mught be some variatins between this FS and the win98 FS... but my linux has no problem working with ANY of these partitions and filesystems...
It is not an issue of Linux access to the partition. In certain circumstances when executing programs under Wine (in particular, installers) directory and file names on Fat partitions can get scrambled. And in general Wine is alpha software, so I would think you would not want to give it access to your XP partition.
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