Can't view mail in Inbox

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CentOS 4 systems at least
Dovecot
Sendmail
SquirrelMail 1.4.8

I have a random problem with some accounts. It seems to mostly affect 
only the root account of a virtual domain.

They can login and use SquirrelMail fine. Then suddenly one day they can 
login, see the list of emails in their inbox, but SquirrelMail says the 
message has gone away when you click to open it.

I can create another folder. Move the message to that folder and open 
and read it fine.

It seems that every function works just like it should except for the 
read function and only then on the Inbox.

We store the root user info in /var/www/<username>

We store other account under that virtual host in 
/var/www/homes/<otheruser.domainprefix>

This is very random, happening only to a few accounts and again, it 
seems to just start happening for no apparent reason. Almost all root 
accounts work fine.. then suddenly one breaks at random and stays broken.

Does anyone have any ideas where to start looking?

Best,
John Hinton

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