[Bug 2321925] Review Request: heffte - Highly Efficient FFT for Exascale

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https://bugzilla.redhat.com/show_bug.cgi?id=2321925



--- Comment #10 from Benson Muite <benson_muite@xxxxxxxxxxxxx> ---
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: If your application is a C or C++ application you must list a
     BuildRequires against gcc, gcc-c++ or clang.
[x]: Header files in -devel subpackage, if present.
[x]: Package does not contain any libtool archives (.la)
[x]: Package contains no static executables.
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
     Note: Using prebuilt packages
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "BSD 3-Clause License". 128 files have
     unknown license. Detailed output of licensecheck in /var/lib/copr-
     rpmbuild/results/heffte/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[!]: Package requires other packages for directories it uses.
     Note: No known owner of /usr/include/mpich-x86_64/stock_fft,
     /usr/include/openmpi-x86_64/stock_fft, /usr/share/heffte/testing,
     /usr/share/heffte
[!]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/share/heffte,
     /usr/include/mpich-x86_64/stock_fft,
     /usr/include/openmpi-x86_64/stock_fft, /usr/share/heffte/testing
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[ ]: Package is not known to require an ExcludeArch tag.
[ ]: Package complies to the Packaging Guidelines
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: The License field must be a valid SPDX expression.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 8042 bytes in 2 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[x]: Reviewer should test that the package builds in mock.
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in heffte-
     openmpi , heffte-openmpi-devel , heffte-mpich , heffte-mpich-devel ,
     heffte-examples
[ ]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[ ]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: No rpmlint messages.
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.


Rpmlint
-------
Checking: heffte-openmpi-2.4.1-1.fc42.x86_64.rpm
          heffte-openmpi-devel-2.4.1-1.fc42.x86_64.rpm
          heffte-mpich-2.4.1-1.fc42.x86_64.rpm
          heffte-mpich-devel-2.4.1-1.fc42.x86_64.rpm
          heffte-examples-2.4.1-1.fc42.noarch.rpm
          heffte-debuginfo-2.4.1-1.fc42.x86_64.rpm
          heffte-debugsource-2.4.1-1.fc42.x86_64.rpm
          heffte-2.4.1-1.fc42.src.rpm
============================ rpmlint session starts
============================
rpmlint: 2.5.0
configuration:
    /usr/lib/python3.12/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-legacy-licenses.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmpf83u_rho')]
checks: 32, packages: 8

heffte-examples.noarch: W: summary-not-capitalized example file for heffte
heffte-mpich.x86_64: W: summary-not-capitalized mpich libraries for heffte
heffte-mpich-devel.x86_64: W: summary-not-capitalized mpich development headers
and libraries for heffte
heffte-openmpi.x86_64: W: summary-not-capitalized openmpi libraries for heffte
heffte-openmpi-devel.x86_64: W: summary-not-capitalized openmpi development
headers and libraries for heffte
heffte.src: E: spelling-error ('exascale', '%description -l en_US exascale ->
scale')
heffte-examples.noarch: E: spelling-error ('exascale', '%description -l en_US
exascale -> scale')
heffte-mpich.x86_64: E: spelling-error ('exascale', '%description -l en_US
exascale -> scale')
heffte-mpich-devel.x86_64: E: spelling-error ('exascale', '%description -l
en_US exascale -> scale')
heffte-openmpi.x86_64: E: spelling-error ('exascale', '%description -l en_US
exascale -> scale')
heffte-openmpi-devel.x86_64: E: spelling-error ('exascale', '%description -l
en_US exascale -> scale')
heffte-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
heffte-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
heffte-mpich.x86_64: E: no-ldconfig-symlink
/usr/lib64/mpich/lib/libheffte.so.2.4.1
heffte-mpich.x86_64: E: no-ldconfig-symlink
/usr/lib64/mpich/lib/libhefftefftwfortran.so.2.4.1
heffte-mpich.x86_64: E: no-ldconfig-symlink
/usr/lib64/mpich/lib/libhefftestockfortran.so.2.4.1
heffte-openmpi.x86_64: E: no-ldconfig-symlink
/usr/lib64/openmpi/lib/libheffte.so.2.4.1
heffte-openmpi.x86_64: E: no-ldconfig-symlink
/usr/lib64/openmpi/lib/libhefftefftwfortran.so.2.4.1
heffte-openmpi.x86_64: E: no-ldconfig-symlink
/usr/lib64/openmpi/lib/libhefftestockfortran.so.2.4.1
heffte-examples.noarch: W: no-documentation
heffte-mpich-devel.x86_64: W: no-documentation
heffte-openmpi-devel.x86_64: W: no-documentation
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_c.c
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_fftw.cpp
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_gpu.cpp
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_options.cpp
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_r2c.cpp
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_r2r.cpp
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_sycl.cpp
heffte-examples.noarch: W: devel-file-in-non-devel-package
/usr/share/heffte/examples/heffte_example_vectors.cpp
heffte-mpich-devel.x86_64: W: dangling-relative-symlink
/usr/lib64/mpich/lib/libheffte.so.2 libheffte.so.2.4.1
heffte-mpich-devel.x86_64: W: dangling-relative-symlink
/usr/lib64/mpich/lib/libhefftefftwfortran.so.2 libhefftefftwfortran.so.2.4.1
heffte-mpich-devel.x86_64: W: dangling-relative-symlink
/usr/lib64/mpich/lib/libhefftestockfortran.so.2 libhefftestockfortran.so.2.4.1
heffte-openmpi-devel.x86_64: W: dangling-relative-symlink
/usr/lib64/openmpi/lib/libheffte.so.2 libheffte.so.2.4.1
heffte-openmpi-devel.x86_64: W: dangling-relative-symlink
/usr/lib64/openmpi/lib/libhefftefftwfortran.so.2 libhefftefftwfortran.so.2.4.1
heffte-openmpi-devel.x86_64: W: dangling-relative-symlink
/usr/lib64/openmpi/lib/libhefftestockfortran.so.2
libhefftestockfortran.so.2.4.1
 8 packages and 0 specfiles checked; 12 errors, 24 warnings, 64 filtered, 12
badness; has taken 0.9 s 




Rpmlint (debuginfo)
-------------------
Checking: heffte-openmpi-debuginfo-2.4.1-1.fc42.x86_64.rpm
          heffte-debuginfo-2.4.1-1.fc42.x86_64.rpm
          heffte-mpich-debuginfo-2.4.1-1.fc42.x86_64.rpm
============================ rpmlint session starts
============================
rpmlint: 2.5.0
configuration:
    /usr/lib/python3.12/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-legacy-licenses.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmpxo94a82d')]
checks: 32, packages: 3

 3 packages and 0 specfiles checked; 0 errors, 0 warnings, 28 filtered, 0
badness; has taken 0.4 s 





Rpmlint (installed packages)
----------------------------
(none): E: there is no installed rpm "heffte-openmpi-debuginfo".
(none): E: there is no installed rpm "heffte-examples".
(none): E: there is no installed rpm "heffte-openmpi".
(none): E: there is no installed rpm "heffte-mpich-debuginfo".
(none): E: there is no installed rpm "heffte-debugsource".
(none): E: there is no installed rpm "heffte-mpich".
(none): E: there is no installed rpm "heffte-debuginfo".
(none): E: there is no installed rpm "heffte-openmpi-devel".
(none): E: there is no installed rpm "heffte-mpich-devel".
There are no files to process nor additional arguments.
Nothing to do, aborting.
============================ rpmlint session starts
============================
rpmlint: 2.5.0
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 9

 0 packages and 0 specfiles checked; 0 errors, 0 warnings, 0 filtered, 0
badness; has taken 0.0 s 



Source checksums
----------------
https://github.com/icl-utk-edu/heffte/archive/v2.4.1.tar.gz#/heffte-2.4.1.tar.gz
:
  CHECKSUM(SHA256) this package     :
de2cf26df5d61baac7841525db3f393cb007f79612ac7534fd4757f154ba3e6c
  CHECKSUM(SHA256) upstream package :
de2cf26df5d61baac7841525db3f393cb007f79612ac7534fd4757f154ba3e6c


Requires
--------
heffte-openmpi (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libfftw3.so.3()(64bit)
    libfftw3f.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libgcc_s.so.1(GCC_3.3.1)(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libheffte.so.2()(64bit)(openmpi-x86_64)
    libm.so.6()(64bit)
    libmpi.so.40()(64bit)(openmpi-x86_64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.15)(64bit)
    libstdc++.so.6(CXXABI_1.3.9)(64bit)
    rtld(GNU_HASH)

heffte-openmpi-devel (rpmlib, GLIBC filtered):
    heffte-openmpi(x86-64)
    openmpi-devel

heffte-mpich (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libfftw3.so.3()(64bit)
    libfftw3f.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libgcc_s.so.1(GCC_3.3.1)(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libheffte.so.2()(64bit)(mpich-x86_64)
    libm.so.6()(64bit)
    libmpi.so.12()(64bit)(mpich-x86_64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.15)(64bit)
    libstdc++.so.6(CXXABI_1.3.9)(64bit)
    rtld(GNU_HASH)

heffte-mpich-devel (rpmlib, GLIBC filtered):
    heffte-mpich(x86-64)
    mpich-devel

heffte-examples (rpmlib, GLIBC filtered):
    (heffte-openmpi-devel = 2.4.1 or heffte-mpich-devel = 2.4.1)

heffte-debuginfo (rpmlib, GLIBC filtered):

heffte-debugsource (rpmlib, GLIBC filtered):



Provides
--------
heffte-openmpi:
    heffte-openmpi
    heffte-openmpi(x86-64)
    libheffte.so.2()(64bit)(openmpi-x86_64)
    libhefftefftwfortran.so.2()(64bit)(openmpi-x86_64)
    libhefftestockfortran.so.2()(64bit)(openmpi-x86_64)

heffte-openmpi-devel:
    heffte-openmpi-devel
    heffte-openmpi-devel(x86-64)

heffte-mpich:
    heffte-mpich
    heffte-mpich(x86-64)
    libheffte.so.2()(64bit)(mpich-x86_64)
    libhefftefftwfortran.so.2()(64bit)(mpich-x86_64)
    libhefftestockfortran.so.2()(64bit)(mpich-x86_64)

heffte-mpich-devel:
    heffte-mpich-devel
    heffte-mpich-devel(x86-64)

heffte-examples:
    heffte-examples

heffte-debuginfo:
    heffte-debuginfo
    heffte-debuginfo(x86-64)

heffte-debugsource:
    heffte-debugsource
    heffte-debugsource(x86-64)



Generated by fedora-review 0.10.0 (e79b66b) last change: 2023-07-24
Command line :/bin/fedora-review --no-colors --prebuilt --rpm-spec --name
heffte --mock-config /var/lib/copr-rpmbuild/results/configs/child.cfg
Buildroot used: fedora-rawhide-x86_64
Active plugins: Shell-api, C/C++, Generic
Disabled plugins: Java, fonts, Perl, SugarActivity, Python, R, PHP, Haskell,
Ocaml
Disabled flags: EXARCH, EPEL6, EPEL7, DISTTAG, BATCH

Comments:
a) Did mock build on a Rocky linux server, so could not run Fedora-review
there.
b) Consider changing:
Source0:       
https://github.com/icl-utk-edu/heffte/archive/v%{version}.tar.gz#/%{name}-%{version}.tar.gz
to
Source:       
https://github.com/icl-utk-edu/heffte/archive/v%{version}/%{name}-%{version}.tar.gz
as sources do not need to be numbered and the url follows suggested format in
the packaging guidelines:
c) Please ensure
/usr/include/mpich-x86_64/stock_fft
/usr/include/openmpi-x86_64/stock_fft
are owned, use

%files openmpi
%doc README.md
%license LICENSE
%{_libdir}/openmpi*/lib/lib%{name}*.so.%{version}

%files openmpi-devel
%{_includedir}/openmpi*/%{name}*
%dir %{_includedir}/openmpi*/stock_fft
%{_includedir}/openmpi*/stock_fft/*.h
%{_libdir}/openmpi*/lib/cmake/Heffte
%{_libdir}/openmpi*/lib/lib%{name}*.so
%{_libdir}/openmpi*/lib/lib%{name}*.so.%{sover}

%files mpich
%doc README.md
%license LICENSE
%{_libdir}/mpich*/lib/lib%{name}*.so.%{version}

%files mpich-devel
%{_includedir}/mpich*/%{name}*
%dir %{_includedir}/mpich*/stock_fft
%{_includedir}/mpich*/stock_fft/*.h
%{_libdir}/mpich*/lib/cmake/Heffte
%{_libdir}/mpich*/lib/lib%{name}*.so
%{_libdir}/mpich*/lib/lib%{name}*.so.%{sover}

%files examples
%{_datadir}/%{name}/examples
%dir %{_datadir}/%{name}
%{_datadir}/%{name}/HeffteMakefile.in
%dir %{_datadir}/%{name}/testing
%{_datadir}/%{name}/testing/CMakeLists.txt

d) Is the testing configuration needed? It is installed by:
https://github.com/icl-utk-edu/heffte/blob/master/CMakeLists.txt#L328-L337
The resulting directories
/usr/share/heffte/testing
/usr/share/heffte
are not currently owned.
e) Can documentation be built? Current configuration is for HTML documentation:
https://github.com/icl-utk-edu/heffte/blob/master/doxygen/CMakeLists.txt
though Doxygen can generate man pages.
f) Please capitalize summaries


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