[Bug 697836] Review Request: mmseq - Haplotype and isoform specific expression estimation for RNA-seq

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https://bugzilla.redhat.com/show_bug.cgi?id=697836

--- Comment #2 from Adam Huffman <bloch@xxxxxxxxxxxx> 2011-05-08 08:01:13 EDT ---
(In reply to comment #1)
> Just some comments:

Thanks for looking

> 
> Please include the license file. The postal addresses of the FSF are outdated
> in several files.
> 

File included and I'll contact upstream about the out of data FSF address.

> Use -p on the install commands, at least for the scripts. One of the scripts
> uses the samtools binary, so you'll need an explicit Require on that, as RPM
> will only install samtools-libs
> 

Done.

> Besides the first part of the package description is pretty generic, it says,
> it would contain instructions. I can't see any and especially the mmseq binary
> is especially sparse on saying anything. Why does the description not have the
> word "Haplotype"?
>

I was trying to differentiate the description from the summary but have
improved it now.

> Why did you choose to not install the Perl script?
> 

Fixed.

> You might want to add "-b .name_of_the_patch" to the patch macros. Please also
> comment on the patches.

Done.

I've also updated to the latest upstream release.

http://verdurin.fedorapeople.org/reviews/mmseq/mmseq.spec

http://verdurin.fedorapeople.org/reviews/mmseq/mmseq-0.9.10b-1.fc16.src.rpm

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