Re: storing pg logs outside of rocksdb

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On Wed, Jun 20, 2018 at 7:55 PM, Mark Nelson <mark.a.nelson@xxxxxxxxx> wrote:
> Hi Lisa,
>
>
> On 06/20/2018 03:19 AM, xiaoyan li wrote:
>>
>>   Hi all,
>> I wrote a poc to split pglog from Rocksdb and store them into
>> standalone space in the block device.
>
>
> Excellent!  This is very exciting!
>
>> The updates are done in OSD and BlueStore:
>>
>> OSD parts:
>> 1.       Split pglog entries and pglog info from omaps.
>> BlueStore:
>> 1.       Allocate 16M space in block device per PG for storing pglog.
>> 2.       Per every transaction from OSD,  combine pglog entries and
>> pglog info, and write them into a block. The block is set to 4k at
>> this moment.
>>
>> Currently, I only make the write workflow work.
>> With librbd+fio on a cluster with an OSD (on Intel Optane 370G), I got
>> the following performance for 4k random writes, and the performance
>> got 13.87% better.
>>
>> Master:
>>    write: IOPS=48.3k, BW=189MiB/s (198MB/s)(55.3GiB/300009msec)
>>      slat (nsec): min=1032, max=1683.2k, avg=4345.13, stdev=3988.69
>>      clat (msec): min=3, max=123, avg=10.60, stdev= 8.31
>>       lat (msec): min=3, max=123, avg=10.60, stdev= 8.31
>>
>> Pgsplit branch:
>>    write: IOPS=55.0k, BW=215MiB/s (225MB/s)(62.0GiB/300010msec)
>>      slat (nsec): min=1068, max=1339.7k, avg=4360.58, stdev=3878.47
>>      clat (msec): min=2, max=120, avg= 9.30, stdev= 6.92
>>       lat (msec): min=2, max=120, avg= 9.31, stdev= 6.92
>
>
> These are better numbers than I typically get!  I'll play with your branch
> but usually I see us pegged in this workload in the kv_sync_thread.  Did you
> notice any significant change in CPU consumption?
>
>>
>> Here is the POC:
>> https://github.com/lixiaoy1/ceph/commits/pglog-split-fastinfo
>> The problem is that per every transaction, I use a 4k block to save
>> the pglog entries and pglog info which is only 130+920 = 1050 bytes.
>> This wastes a lot of space.
>> Any suggestions?
>
>
> I guess 100*3000*4k = ~1.2GB?
>
> Josh, based on our discussion last week, the size of entries is going to be
> variable right?
>
> Another approach you could try could be to write all updates to a single log
> that you periodically rotate.  You keep a reference count of what entries
> are where and when all references to a given log drop off you delete it.
> The space amplification could potentially be quite high in the pathological
> case (100*3000*sizeof(log)!), but you could do so a really coarse grain
> compaction if that really proved to be a problem. It'd be better for HDD,
> but your current approach might still be better on flash.

Thanks for your comments, Mark. I need to write pg entry and pglog info into
block device per every transaction. These are write IOs smaller than 4K.
Do you mean at first I write them in 4k block size, and later compact them into
final place?
The space amplification problem can be decreased if I use 512 block size.
I can split the space into 4k stripe, and delete logs in unit of the
stripe. In a stripe,
pglog are appended.  So no need to use fixed space for pglog. And space can
be nearly (100*3000*sizeof(log).

>
> Mark
>
>
>>
>> Best wishes
>> Lisa
>>
>> On Thu, Apr 5, 2018 at 12:09 AM, Mark Nelson <mnelson@xxxxxxxxxx> wrote:
>>>
>>>
>>>
>>> On 04/03/2018 09:36 PM, xiaoyan li wrote:
>>>>
>>>>
>>>> On Tue, Apr 3, 2018 at 11:15 PM, Mark Nelson <mark.a.nelson@xxxxxxxxx>
>>>> wrote:
>>>>>
>>>>>
>>>>>
>>>>> On 04/03/2018 09:56 AM, Mark Nelson wrote:
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 04/03/2018 08:27 AM, Sage Weil wrote:
>>>>>>>
>>>>>>>
>>>>>>> On Tue, 3 Apr 2018, Li Wang wrote:
>>>>>>>>
>>>>>>>>
>>>>>>>> Hi,
>>>>>>>>      Before we move forward, could someone give a test such that
>>>>>>>> the pglog not written into rocksdb at all, to see how much is the
>>>>>>>> performance improvement as the upper bound, it shoule be less than
>>>>>>>> turning on the bluestore_debug_omit_kv_commit
>>>>>>>
>>>>>>>
>>>>>>> +1
>>>>>>>
>>>>>>> (The PetStore behavior doesn't tell us anything about how BlueStore
>>>>>>> will
>>>>>>> behave without the pglog overhead.)
>>>>>>>
>>>>>>> sage
>>>>>>
>>>>>>
>>>>>>
>>>>>> We do have some testing of the bluestore's behavior, though it's about
>>>>>> 6
>>>>>> months old now:
>>>>>>
>>>>>> - ~1 hour 4K random overwrites to RBD on 1 NVMe OSD
>>>>>>
>>>>>> - 128 PGs
>>>>>>
>>>>>> - stats are sloppy since they only appear every ~10 mins
>>>>>>
>>>>>> *- default min_pg_log_entries = 1500, trim = default, iops = 26.6K*
>>>>>>
>>>>>>      - Default CF - Size:  65.63MB, KeyIn:  22M, KeyDrop:  17M, Flush:
>>>>>> 7.858GB
>>>>>>
>>>>>>      - [M] CF     - Size: 118.09MB, KeyIn: 302M, KeyDrop: 269M, Flush:
>>>>>> 15.847GB <-- with this workload this is pg log and dup op kv entries
>>>>>>
>>>>>>      - [L] CF     - Size:   1.00MB, KeyIn: 181K, KeyDrop:  80K, Flush:
>>>>>> 0.320GB <-- deferred writes*- min_pg_log_entries = 10, trim = 10, iops
>>>>>> =
>>>>>> 24.2K*
>>>>>>
>>>>>>      - Default CF - Size:  23.15MB, KeyIn:  21M, KeyDrop:  16M, Flush:
>>>>>> 7.538GB
>>>>>>
>>>>>>      - [M] CF     - Size:  60.89MB, KeyIn: 277M, KeyDrop: 250M, Flush:
>>>>>> 8.884GB <-- with this workload this is pg log and dup op kv entries
>>>>>>
>>>>>>      - [L] CF     - Size:   1.12MB, KeyIn: 188K, KeyDrop:  83K, Flush:
>>>>>> 0.331GB <-- deferred writes - min_pg_log_entries = 1, trim = 1, *iops
>>>>>> =
>>>>>> 23.8K*
>>>>>>
>>>>>>      - Default CF - Size:  68.58MB, KeyIn:  22M, KeyDrop:  17M, Flush:
>>>>>> 7.936GB
>>>>>>
>>>>>>      - [M] CF     - Size:  96.39MB, KeyIn: 302M, KeyDrop: 262M, Flush:
>>>>>> 9.289GB <-- with this workload this is pg log and dup op kv entries
>>>>>>
>>>>>>      - [L] CF     - Size:   1.04MB, KeyIn: 209K, KeyDrop:  92K, Flush:
>>>>>> 0.368GB <-- deferred writes
>>>>>>
>>>>>> - min_pg_log_entires = 3000, trim = 1, *iops = 25.8K*
>>>>>>
>>>>>> *
>>>>>> The actual performance variation here I think is much less important
>>>>>> than
>>>>>> the KeyIn behavior.  The NVMe devices in these tests are fast enough
>>>>>> to
>>>>>> absorb a fair amount of overhead.
>>>>>
>>>>>
>>>>>
>>>>> Ugh, sorry.  That will teach me to talk in meeting and paste at the
>>>>> same
>>>>> time.  Those were the wrong stats.  Here are the right ones:
>>>>>
>>>>>>           - ~1 hour 4K random overwrites to RBD on 1 NVMe OSD
>>>>>>           - 128 PGs
>>>>>>           - stats are sloppy since they only appear every ~10 mins
>>>>>>           - min_pg_log_entries = 3000, trim = default, pginfo hack,
>>>>>> iops
>>>>>> =
>>>>>> 27.8K
>>>>>>               - Default CF - Size:  23.15MB, KeyIn:  24M, KeyDrop:
>>>>>> 19M,
>>>>>> Flush:  8.662GB
>>>>>>               - [M] CF     - Size: 159.97MB, KeyIn: 162M, KeyDrop:
>>>>>> 139M,
>>>>>> Flush: 10.335GB <-- with this workload this is pg log and dup op kv
>>>>>> entries
>>>>>>               - [L] CF     - Size:   1.39MB, KeyIn: 201K, KeyDrop:
>>>>>> 89K,
>>>>>> Flush:  0.355GB <-- deferred writes                -
>>>>>> min_pg_log_entries
>>>>>> =
>>>>>> 3000, trim = default iops = 28.3K
>>>>>>               - Default CF - Size:  23.13MB, KeyIn:  25M, KeyDrop:
>>>>>> 19M,
>>>>>> Flush:  8.762GB
>>>>>>               - [M] CF     - Size: 159.97MB, KeyIn: 202M, KeyDrop:
>>>>>> 175M,
>>>>>> Flush: 16.890GB <-- with this workload this is pg log and dup op kv
>>>>>> entries
>>>>>>               - [L] CF     - Size:   0.86MB, KeyIn: 201K, KeyDrop:
>>>>>> 89K,
>>>>>> Flush:  0.355GB <-- deferred writes
>>>>>>           - default min_pg_log_entries = 1500, trim = default, iops =
>>>>>> 26.6K
>>>>>>               - Default CF - Size:  65.63MB, KeyIn:  22M, KeyDrop:
>>>>>> 17M,
>>>>>> Flush:  7.858GB
>>>>>>               - [M] CF     - Size: 118.09MB, KeyIn: 302M, KeyDrop:
>>>>>> 269M,
>>>>>> Flush: 15.847GB <-- with this workload this is pg log and dup op kv
>>>>>> entries
>>>>>>               - [L] CF     - Size:   1.00MB, KeyIn: 181K, KeyDrop:
>>>>>> 80K,
>>>>>> Flush:  0.320GB <-- deferred writes
>>>>>>           - min_pg_log_entries = 10, trim = 10, iops = 24.2K
>>>>>>               - Default CF - Size:  23.15MB, KeyIn:  21M, KeyDrop:
>>>>>> 16M,
>>>>>> Flush:  7.538GB
>>>>>>               - [M] CF     - Size:  60.89MB, KeyIn: 277M, KeyDrop:
>>>>>> 250M,
>>>>>> Flush:  8.884GB <-- with this workload this is pg log and dup op kv
>>>>>> entries
>>>>>>               - [L] CF     - Size:   1.12MB, KeyIn: 188K, KeyDrop:
>>>>>> 83K,
>>>>>> Flush:  0.331GB <-- deferred writes
>>>>>>           - min_pg_log_entries = 1, trim = 1, iops = 23.8K
>>>>>>               - Default CF - Size:  68.58MB, KeyIn:  22M, KeyDrop:
>>>>>> 17M,
>>>>>> Flush:  7.936GB
>>>>>>               - [M] CF     - Size:  96.39MB, KeyIn: 302M, KeyDrop:
>>>>>> 262M,
>>>>>> Flush:  9.289GB <-- with this workload this is pg log and dup op kv
>>>>>> entries
>>>>>>               - [L] CF     - Size:   1.04MB, KeyIn: 209K, KeyDrop:
>>>>>> 92K,
>>>>>> Flush:  0.368GB <-- deferred writes
>>>>>>           - min_pg_log_entires = 3000, trim = 1, iops = 25.8K
>>>>
>>>>
>>>> Hi Mark, do you extract above results from compaction stats in Rocksdb
>>>> LOG?
>>>
>>>
>>>
>>> Correct, except for the IOPS numbers which were from the client
>>> benchmark.
>>>
>>>
>>>>
>>>> ** Compaction Stats [default] **
>>>> Level    Files   Size     Score Read(GB)  Rn(GB) Rnp1(GB) Write(GB)
>>>> Wnew(GB) Moved(GB) W-Amp Rd(MB/s) Wr(MB/s) Comp(sec) Comp(cnt)
>>>> Avg(sec) KeyIn KeyDrop
>>>>
>>>>
>>>> ----------------------------------------------------------------------------------------------------------------------------------------------------------
>>>>     L0      6/0   270.47 MB   1.1      0.0     0.0      0.0       0.2
>>>>     0.2       0.0   1.0      0.0    154.3         1         4    0.329
>>>>       0      0
>>>>     L1      3/0   190.94 MB   0.7      0.0     0.0      0.0       0.0
>>>>     0.0       0.0   0.0      0.0      0.0         0         0    0.000
>>>>       0      0
>>>>    Sum      9/0   461.40 MB   0.0      0.0     0.0      0.0       0.2
>>>>     0.2       0.0   1.0      0.0    154.3         1         4    0.329
>>>>       0      0
>>>>    Int      0/0    0.00 KB   0.0      0.0     0.0      0.0       0.2
>>>>    0.2       0.0   1.0      0.0    154.3         1         4    0.329
>>>>      0      0
>>>> Uptime(secs): 9.9 total, 9.9 interval
>>>> Flush(GB): cumulative 0.198, interval 0.198
>>>>
>>>>> Note specifically how the KeyIn rate drops with the min_pg_log_entries
>>>>> increased (ie disable dup_ops) and hacking out pginfo.  I suspect that
>>>>> commenting out log_operation would reduce the KeyIn rate significantly
>>>>> further.  Again these drives can absorb a lot of this so the
>>>>> improvement
>>>>> in
>>>>> iops is fairly modest (and setting min_pg_log_entries low actually
>>>>> hurts!),
>>>>> but this isn't just about performance, it's about the behavior that we
>>>>> invoke.  The Petstore results absolutely show us that on very fast
>>>>> storage
>>>>> we see a dramatic CPU usage reduction by removing log_operation and
>>>>> pginfo,
>>>>> so I think we should focus on what kind of behavior we want
>>>>> pglog/pginfo/dup_ops to invoke.
>>>>>
>>>>> Mark
>>>>>
>>>>>
>>>>>>
>>>>>> *
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>> Cheers,
>>>>>>>> Li Wang
>>>>>>>>
>>>>>>>> 2018-04-02 13:29 GMT+08:00 xiaoyan li <wisher2003@xxxxxxxxx>:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Hi all,
>>>>>>>>>
>>>>>>>>> Based on your above discussion about pglog, I have the following
>>>>>>>>> rough
>>>>>>>>> design. Please help to give your suggestions.
>>>>>>>>>
>>>>>>>>> There will be three partitions: raw part for customer IOs, Bluefs
>>>>>>>>> for
>>>>>>>>> Rocksdb, and pglog partition.
>>>>>>>>> The former two partitions are same as current. The pglog partition
>>>>>>>>> is
>>>>>>>>> splitted into 1M blocks. We allocate blocks for ring buffers per
>>>>>>>>> pg.
>>>>>>>>> We will have such following data:
>>>>>>>>>
>>>>>>>>> Allocation bitmap (just in memory)
>>>>>>>>>
>>>>>>>>> The pglog partition has a bitmap to record which block is allocated
>>>>>>>>> or
>>>>>>>>> not. We can rebuild it through pg->allocated_block_list when
>>>>>>>>> starting,
>>>>>>>>> and no need to store it in persistent disk. But we will store basic
>>>>>>>>> information about the pglog partition in Rocksdb, like block size,
>>>>>>>>> block number etc when the objectstore is initialized.
>>>>>>>>>
>>>>>>>>> Pg -> allocated_blocks_list
>>>>>>>>>
>>>>>>>>> When a pg is created and IOs start, we can allocate a block for
>>>>>>>>> every
>>>>>>>>> pg. Every pglog entry is less than 300 bytes, 1M can store 3495
>>>>>>>>> entries. When total pglog entries increase and exceed the number,
>>>>>>>>> we
>>>>>>>>> can add a new block to the pg.
>>>>>>>>>
>>>>>>>>> Pg->start_position
>>>>>>>>>
>>>>>>>>> Record the oldest valid entry per pg.
>>>>>>>>>
>>>>>>>>> Pg->next_position
>>>>>>>>>
>>>>>>>>> Record the next entry to add per pg. The data will be updated
>>>>>>>>> frequently, but Rocksdb is suitable for its io mode, and most of
>>>>>>>>> data will be merged.
>>>>>>>>>
>>>>>>>>> Updated Bluestore write progess:
>>>>>>>>>
>>>>>>>>> When writing data to disk (before metadata updating), we can append
>>>>>>>>> the pglog entry to its ring buffer in parallel.
>>>>>>>>> After that, submit pg ring buffer changes like pg->next_position,
>>>>>>>>> and
>>>>>>>>> current other metadata changes to Rocksdb.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Fri, Mar 30, 2018 at 6:23 PM, Varada Kari
>>>>>>>>> <varada.kari@xxxxxxxxx>
>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Fri, Mar 30, 2018 at 1:01 PM, Li Wang
>>>>>>>>>> <laurence.liwang@xxxxxxxxx>
>>>>>>>>>> wrote:
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Hi,
>>>>>>>>>>>      If we wanna store pg log in a standalone ring buffer,
>>>>>>>>>>> another
>>>>>>>>>>> candidate
>>>>>>>>>>> is the deferred write, why not use the ring buffer as the journal
>>>>>>>>>>> for
>>>>>>>>>>> 4K random
>>>>>>>>>>> write, it should be much more lightweight than rocksdb
>>>>>>>>>>>
>>>>>>>>>> It will be similar to FileStore implementation, for small writes.
>>>>>>>>>> That
>>>>>>>>>> comes with the same alignment issues and given
>>>>>>>>>> write amplification. Rocksdb nicely abstracts that and we don't
>>>>>>>>>> make
>>>>>>>>>> it to L0 files because of WAL handling.
>>>>>>>>>>
>>>>>>>>>> Varada
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Cheers,
>>>>>>>>>>> Li Wang
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> 2018-03-30 4:04 GMT+08:00 Sage Weil <sweil@xxxxxxxxxx>:
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> On Wed, 28 Mar 2018, Matt Benjamin wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Wed, Mar 28, 2018 at 1:44 PM, Mark Nelson
>>>>>>>>>>>>> <mnelson@xxxxxxxxxx>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On 03/28/2018 12:21 PM, Adam C. Emerson wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> 2) It sure feels like conceptually the pglog should be
>>>>>>>>>>>>>> represented
>>>>>>>>>>>>>> as a
>>>>>>>>>>>>>> per-pg ring buffer rather than key/value data.  Maybe there
>>>>>>>>>>>>>> are
>>>>>>>>>>>>>> really
>>>>>>>>>>>>>> important reasons that it shouldn't be, but I don't currently
>>>>>>>>>>>>>> see
>>>>>>>>>>>>>> them.  As
>>>>>>>>>>>>>> far as the objectstore is concerned, it seems to me like there
>>>>>>>>>>>>>> are
>>>>>>>>>>>>>> valid
>>>>>>>>>>>>>> reasons to provide some kind of log interface and perhaps that
>>>>>>>>>>>>>> should be
>>>>>>>>>>>>>> used for pg_log.  That sort of opens the door for different
>>>>>>>>>>>>>> object
>>>>>>>>>>>>>> store
>>>>>>>>>>>>>> implementations fulfilling that functionality in whatever ways
>>>>>>>>>>>>>> the
>>>>>>>>>>>>>> author
>>>>>>>>>>>>>> deems fit.
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> In the reddit lingo, pretty much this.  We should be
>>>>>>>>>>>>> concentrating
>>>>>>>>>>>>> on
>>>>>>>>>>>>> this direction, or ruling it out.
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> Yeah, +1
>>>>>>>>>>>>
>>>>>>>>>>>> It seems like step 1 is a proof of concept branch that encodes
>>>>>>>>>>>> pg_log_entry_t's and writes them to a simple ring buffer.  The
>>>>>>>>>>>> first
>>>>>>>>>>>> questions to answer is (a) whether this does in fact improve
>>>>>>>>>>>> things
>>>>>>>>>>>> significantly and (b) whether we want to have an independent
>>>>>>>>>>>> ring
>>>>>>>>>>>> buffer
>>>>>>>>>>>> for each PG or try to mix them into one big one for the whole
>>>>>>>>>>>> OSD
>>>>>>>>>>>> (or
>>>>>>>>>>>> maybe per shard).
>>>>>>>>>>>>
>>>>>>>>>>>> The second question is how that fares on HDDs.  My guess is that
>>>>>>>>>>>> the
>>>>>>>>>>>> current rocksdb strategy is better because it reduces the number
>>>>>>>>>>>> of
>>>>>>>>>>>> IOs
>>>>>>>>>>>> and the additional data getting compacted (and CPU usage) isn't
>>>>>>>>>>>> the
>>>>>>>>>>>> limiting factor on HDD perforamnce (IOPS are).  (But maybe we'll
>>>>>>>>>>>> get
>>>>>>>>>>>> lucky
>>>>>>>>>>>> and the new strategy will be best for both HDD and SSD..)
>>>>>>>>>>>>
>>>>>>>>>>>> Then we have to modify PGLog to be a complete implementation.  A
>>>>>>>>>>>> strict
>>>>>>>>>>>> ring buffer probably won't work because the PG log might not
>>>>>>>>>>>> trim
>>>>>>>>>>>> and
>>>>>>>>>>>> because log entries are variable length, so there'll probably
>>>>>>>>>>>> need
>>>>>>>>>>>> to be
>>>>>>>>>>>> some simple mapping table (vs a trivial start/end ring buffer
>>>>>>>>>>>> position) to
>>>>>>>>>>>> deal with that.  We have to trim the log periodically, so every
>>>>>>>>>>>> so
>>>>>>>>>>>> many
>>>>>>>>>>>> entries we may want to realign with a min_alloc_size boundary.
>>>>>>>>>>>> We
>>>>>>>>>>>> someones have to back up and rewrite divergent portions of the
>>>>>>>>>>>> log
>>>>>>>>>>>> (during
>>>>>>>>>>>> peering) so we'll need to sort out whether that is a complete
>>>>>>>>>>>> reencode/rewrite or whether we keep encoded entries in ram
>>>>>>>>>>>> (individually
>>>>>>>>>>>> or in chunks), etc etc.
>>>>>>>>>>>>
>>>>>>>>>>>> sage
>>>>>>>>>>>> --
>>>>>>>>>>>> To unsubscribe from this list: send the line "unsubscribe
>>>>>>>>>>>> ceph-devel" in
>>>>>>>>>>>> the body of a message to majordomo@xxxxxxxxxxxxxxx
>>>>>>>>>>>> More majordomo info at
>>>>>>>>>>>> http://vger.kernel.org/majordomo-info.html
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Best wishes
>>>>>>>>> Lisa
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>> --
>>>>>> To unsubscribe from this list: send the line "unsubscribe ceph-devel"
>>>>>> in
>>>>>> the body of a message to majordomo@xxxxxxxxxxxxxxx
>>>>>> More majordomo info at  http://vger.kernel.org/majordomo-info.html
>>>>
>>>>
>>>>
>>>>
>>>
>>
>>
>>
>



-- 
Best wishes
Lisa
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