Re: Work update related to rocksdb

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On Tue, 17 Oct 2017, xiaoyan li wrote:
> On Tue, Oct 17, 2017 at 10:49 AM, Sage Weil <sweil@xxxxxxxxxx> wrote:
> > On Tue, 17 Oct 2017, xiaoyan li wrote:
> >> Hi Sage and Mark,
> >> A question here: OMAP pg logs are added by "set", are they only
> >> deleted by rm_range_keys in BlueStore?
> >> https://github.com/ceph/ceph/pull/18279/files
> >
> > Ooh, I didn't realize we weren't doing this already--we should definitely
> > merge this patch.  But:
> >
> >> If yes, maybe when dedup, we don't need to compare the keys in all
> >> memtables, we just compare keys in current memtable with rm_range_keys
> >> in later memtables?
> >
> > They are currently deleted explicitly by key name by the OSD code; it
> > doesn't call the range-based delete method.  Radoslaw had a test branch
> > last week that tried using rm_range_keys instead but he didn't see any
> > real difference... presumably because we didn't realize the bluestore omap
> > code wasn't passing a range delete down to KeyValuDB!  We should retest on
> > top of your change.
> I will also have a check.
> A memtable table includes two parts: key/value operations(set, delete,
> deletesingle, merge), and range_del(includes range delete). I am
> wondering if all the pg logs are deleted by range delete, we can just
> check whether a key/value is deleted in range_del parts of later
> memtables when dedup flush, this can be save a lot of comparison
> effort.

That sounds very promising!  Radoslaw, can you share your patch changing 
the PG log trimming behavior?

Thanks!
sage

> 
> >
> > Thanks!
> > sage
> >
> >
> >
> >  >
> >>
> >> On Tue, Oct 17, 2017 at 10:18 AM, xiaoyan li <wisher2003@xxxxxxxxx> wrote:
> >> > Hi Sage and Mark,
> >> > Following tests results I give are tested based on KV sequences got
> >> > from librbd+fio 4k or 16k random writes in 30 mins.
> >> > In my opinion, we may use dedup flush style for onodes and deferred
> >> > data, but use default merge flush style for other data.
> >> >
> >> > On Mon, Oct 16, 2017 at 9:50 PM, Mark Nelson <mnelson@xxxxxxxxxx> wrote:
> >> >>
> >> >>
> >> >> On 10/16/2017 08:28 AM, Sage Weil wrote:
> >> >>>
> >> >>> [adding ceph-devel]
> >> >>>
> >> >>> On Mon, 16 Oct 2017, Mark Nelson wrote:
> >> >>>>
> >> >>>> Hi Lisa,
> >> >>>>
> >> >>>> Excellent testing!   This is exactly what we were trying to understand.
> >> >>>>
> >> >>>> On 10/16/2017 12:55 AM, Li, Xiaoyan wrote:
> >> >>>>>
> >> >>>>> Hi Mark,
> >> >>>>>
> >> >>>>> Based on my testing, when setting min_write_buffer_number_to_merge as 2,
> >> >>>>> the
> >> >>>>> onodes and deferred data written into L0 SST can decreased a lot with my
> >> >>>>> rocksdb dedup package.
> >> >>>>>
> >> >>>>> But for omap data, it needs to span more memtables. I tested omap data
> >> >>>>> in
> >> >>>>> separate column family. From the data, you can see when
> >> >>>>> min_write_buffer_number_to_merge is set to 4, the data written into L0
> >> >>>>> SST
> >> >>>>> is good. That means it has to compare current memTable to flush with
> >> >>>>> later 3
> >> >>>>> memtables recursively.
> >> >>>>> kFlushStyleDedup is to new flush style in my rocksdb dedup package.
> >> >>>>> kFlushStyleMerge is current flush style in master branch.
> >> >>>>>
> >> >>>>> But this is just considered from data written into L0. With more
> >> >>>>> memtables
> >> >>>>> to compare, it sacrifices CPU and computing time.
> >> >>>>>
> >> >>>>> Memtable size: 256MB
> >> >>>>> max_write_buffer_number min_write_buffer_number_to_merge
> >> >>>>> flush_style     Omap data written into L0 SST(unit: MB)
> >> >>>>> 16      8       kFlushStyleMerge        7665
> >> >>>>> 16      8       kFlushStyleDedup        3770
> >> >>>>> 8       4       kFlushStyleMerge        11470
> >> >>>>> 8       4       kFlushStyleDedup        3922
> >> >>>>> 6       3       kFlushStyleMerge        14059
> >> >>>>> 6       3       kFlushStyleDedup        5001
> >> >>>>> 4       2       kFlushStyleMerge        18683
> >> >>>>> 4       2       kFlushStyleDedup        15394
> >> >>>>
> >> >>>>
> >> >>>> Is this only omap data or all data?  It looks like the 6/3 or 8/4 is
> >> >>>> still
> >> >>>> probably the optimal point (And the improvements are quite noticeable!).
> >> > This is only omap data. Dedup can decrease data written into L0 SST,
> >> > but it needs to compare too many memtables.
> >> >
> >> >>>> Sadly we were hoping we might be able to get away with smaller memtables
> >> >>>> (say
> >> >>>> 64MB) with KFlushStyleDedup.  It looks like that might not be the case
> >> >>>> unless
> >> >>>> we increase the number very high.
> >> >>>>
> >> >>>> Sage, this is going to be even worse if we try to keep more pglog entries
> >> >>>> around on flash OSD backends?
> >> >>>
> >> >>>
> >> >>> I think there are three or more factors at play here:
> >> >>>
> >> >>> 1- If we reduce the memtable size, the CPU cost of insertion (baseline)
> >> >>> and the dedup cost will go down.
> >> >>>
> >> >>> 2- If we switch to a small min pg log entries, then most pg log keys
> >> >>> *will* fall into the smaller window (of small memtables * small
> >> >>> min_write_buffer_to_merge).  The dup op keys probably won't, though...
> >> >>> except maybe they will because the values are small and more of them will
> >> >>> fit into the memtables.  But then
> >> >>>
> >> >>> 3- If we have more keys and smaller values, then the CPU overhead will be
> >> >>> higher again.
> >> >>>
> >> >>> For PG logs, I didn't really expect that the dedup style would help; I was
> >> >>> only thinking about the deferred keys.  I wonder if it would make sense to
> >> >>> specify a handful of key prefixes to attempt dedup on, and not bother on
> >> >>> the others?
> >> >>
> >> >>
> >> >> Deferred keys seem to be a much smaller part of the problem right now than
> >> >> pglog.  At least based on what I'm seeing at the moment with NVMe testing.
> >> >> Regarding dedup, it's probably worth testing at the very least.
> >> > I did following tests: all data in default column family. Set
> >> > min_write_buffer_to_merge to 2, check the size of kinds of data
> >> > written into L0 SST files.
> >> > From the data, onodes and deferred data can be removed a lot in dedup style.
> >> >
> >> > Data written into L0 SST files:
> >> >
> >> > 4k random writes (unit: MB)
> >> > FlushStyle      Omap              onodes            deferred           others
> >> > merge       22431.56        23224.54       1530.105          0.906106
> >> > dedup       22188.28        14161.18        12.68681         0.90906
> >> >
> >> > 16k random writes (unit: MB)
> >> > FlushStyle      Omap              onodes            deferred           others
> >> > merge           19260.20          8230.02           0                    1914.50
> >> > dedup           19154.92          2603.90           0
> >> >    2517.15
> >> >
> >> > Note here: for others type, which use "merge" operation, dedup style
> >> > can't make it more efficient. In later, we can set it in separate CF,
> >> > use default merge flush style.
> >> >
> >> >>
> >> >>>
> >> >>> Also, there is the question of where the CPU time is spent.
> >> >>
> >> >>
> >> >> Indeed, but if we can reduce the memtable size it means we save CPU in other
> >> >> areas.  Like you say below, it's complicated.
> >> >>>
> >> >>>
> >> >>> 1- Big memtables means we spend more time in submit_transaction, called by
> >> >>> the kv_sync_thread, which is a bottleneck.
> >> >>
> >> >>
> >> >> At least on NVMe we see it pretty regularly in the wallclock traces.  I need
> >> >> to retest with Radoslav and Adam's hugepages PR to get a feel for how bad it
> >> >> is after that.
> >> >>
> >> >>>
> >> >>> 2- Higher dedup style flush CPU usage is spent in the compaction thread(s)
> >> >>> (I think?), which are asynchronous.
> >> >>
> >> >>
> >> >> L0 compaction is single threaded though so we must be careful....
> >> >>
> >> >>>
> >> >>> At the end of the day I think we need to use less CPU total, so the
> >> >>> optimization of the above factors is a bit complicated.  OTOH if the goal
> >> >>> is IOPS at whatever cost it'll probably mean a slightly different choice.
> >> >>
> >> >>
> >> >> I guess we should consider the trends.  Lots of cores, lots of flash cells.
> >> >> How do we balance high throughput and low latency?
> >> >>
> >> >>>
> >> >>> I would *expect* that if we go from, say, 256mb tables to 64mb tables and
> >> >>> dedup of <= 4 of them, then we'll see a modest net reduction of total CPU
> >> >>> *and* a shift to the compaction threads.
> >> >>
> >> >>
> >> >> It seems like based on Lisa's test results that's too short lived? Maybe I'm
> >> >> not understanding what you mean?
> >> >>
> >> >>>
> >> >>> And changing the pg log min entries will counterintuitively increase the
> >> >>> costs of insertion and dedup flush because more keys will fit in the same
> >> >>> amount of memtable... but if we reduce the memtable size at the same time
> >> >>> we might get a win there too?  Maybe?
> >> >>
> >> >>
> >> >> There's too much variability here to theorycraft it and your "maybe"
> >> >> statement confirms for me. ;)  We need to get a better handle on what's
> >> >> going on.
> >> >>
> >> >>>
> >> >>> Lisa, do you think limiting the dedup check during flush to specific
> >> >>> prefixes would make sense as a general capability?  If so, we could target
> >> >>> this *just* at the high-value keys (e.g., deferred writes) and avoid
> >> >>> incurring very much additional overhead for the key ranges that aren't
> >> >>> sure bets.
> >> > The easiest way to do it is to set data in different CFs, and use
> >> > different flush style(dedup or merge) in different CFs.
> >> >
> >> >>
> >> >>
> >> >> At least in my testing deferred writes during rbd 4k random writes are
> >> >> almost negligible:
> >> >>
> >> >> http://pad.ceph.com/p/performance_weekly
> >> >>
> >> >> I suspect it's all going to be about OMAP.  We need a really big WAL that
> >> >> can keep OMAP around for a long time while quickly flushing object data into
> >> >> small memtables.  On disk it's a big deal that this gets layed out
> >> >> sequentially but on flash I'm wondering if we'd be better off with a
> >> >> separate WAL for OMAP (a different rocksdb shard or different data store
> >> >> entirely).
> >> > Yes, OMAP data is main data written into L0 SST.
> >> >
> >> > Data written into every memtable: (uint: MB)
> >> > IO load          omap          ondes          deferred          others
> >> > 4k RW          37584          85253          323887          250
> >> > 16k RW        33687          73458          0                   3500
> >> >
> >> > In merge flush style with min_buffer_to_merge=2.
> >> > Data written into every L0 SST: (unit MB)
> >> > IO load     Omap              onodes            deferred           others
> >> > 4k RW       22188.28        14161.18        12.68681         0.90906
> >> > 16k RW     19260.20          8230.02           0                    1914.50
> >> >
> >> >>
> >> >> Mark
> >> >>
> >> >>
> >> >>>
> >> >>> sage
> >> >>>
> >> >>>
> >> >>>>> The above KV operation sequences come from 4k random writes in 30mins.
> >> >>>>> Overall, the Rocksdb dedup package can decrease the data written into L0
> >> >>>>> SST, but it needs more comparison. In my opinion, whether to use dedup,
> >> >>>>> it
> >> >>>>> depends on the configuration of the OSD host: whether disk is over busy
> >> >>>>> or
> >> >>>>> CPU is over busy.
> >> >>>>
> >> >>>>
> >> >>>> Do you have any insight into how much CPU overhead it adds?
> >> >>>>
> >> >>>>>
> >> >>>>> Best wishes
> >> >>>>> Lisa
> >> >>
> >> >> --
> >> >> To unsubscribe from this list: send the line "unsubscribe ceph-devel" in
> >> >> the body of a message to majordomo@xxxxxxxxxxxxxxx
> >> >> More majordomo info at  http://vger.kernel.org/majordomo-info.html
> >> >
> >> >
> >> >
> >> > --
> >> > Best wishes
> >> > Lisa
> >>
> >>
> >>
> >> --
> >> Best wishes
> >> Lisa
> >>
> >>
> 
> 
> 
> -- 
> Best wishes
> Lisa
> --
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