Re: Work update related to rocksdb

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Hi Sage and Mark,
Following tests results I give are tested based on KV sequences got
from librbd+fio 4k or 16k random writes in 30 mins.
In my opinion, we may use dedup flush style for onodes and deferred
data, but use default merge flush style for other data.

On Mon, Oct 16, 2017 at 9:50 PM, Mark Nelson <mnelson@xxxxxxxxxx> wrote:
>
>
> On 10/16/2017 08:28 AM, Sage Weil wrote:
>>
>> [adding ceph-devel]
>>
>> On Mon, 16 Oct 2017, Mark Nelson wrote:
>>>
>>> Hi Lisa,
>>>
>>> Excellent testing!   This is exactly what we were trying to understand.
>>>
>>> On 10/16/2017 12:55 AM, Li, Xiaoyan wrote:
>>>>
>>>> Hi Mark,
>>>>
>>>> Based on my testing, when setting min_write_buffer_number_to_merge as 2,
>>>> the
>>>> onodes and deferred data written into L0 SST can decreased a lot with my
>>>> rocksdb dedup package.
>>>>
>>>> But for omap data, it needs to span more memtables. I tested omap data
>>>> in
>>>> separate column family. From the data, you can see when
>>>> min_write_buffer_number_to_merge is set to 4, the data written into L0
>>>> SST
>>>> is good. That means it has to compare current memTable to flush with
>>>> later 3
>>>> memtables recursively.
>>>> kFlushStyleDedup is to new flush style in my rocksdb dedup package.
>>>> kFlushStyleMerge is current flush style in master branch.
>>>>
>>>> But this is just considered from data written into L0. With more
>>>> memtables
>>>> to compare, it sacrifices CPU and computing time.
>>>>
>>>> Memtable size: 256MB
>>>> max_write_buffer_number min_write_buffer_number_to_merge
>>>> flush_style     Omap data written into L0 SST(unit: MB)
>>>> 16      8       kFlushStyleMerge        7665
>>>> 16      8       kFlushStyleDedup        3770
>>>> 8       4       kFlushStyleMerge        11470
>>>> 8       4       kFlushStyleDedup        3922
>>>> 6       3       kFlushStyleMerge        14059
>>>> 6       3       kFlushStyleDedup        5001
>>>> 4       2       kFlushStyleMerge        18683
>>>> 4       2       kFlushStyleDedup        15394
>>>
>>>
>>> Is this only omap data or all data?  It looks like the 6/3 or 8/4 is
>>> still
>>> probably the optimal point (And the improvements are quite noticeable!).
This is only omap data. Dedup can decrease data written into L0 SST,
but it needs to compare too many memtables.

>>> Sadly we were hoping we might be able to get away with smaller memtables
>>> (say
>>> 64MB) with KFlushStyleDedup.  It looks like that might not be the case
>>> unless
>>> we increase the number very high.
>>>
>>> Sage, this is going to be even worse if we try to keep more pglog entries
>>> around on flash OSD backends?
>>
>>
>> I think there are three or more factors at play here:
>>
>> 1- If we reduce the memtable size, the CPU cost of insertion (baseline)
>> and the dedup cost will go down.
>>
>> 2- If we switch to a small min pg log entries, then most pg log keys
>> *will* fall into the smaller window (of small memtables * small
>> min_write_buffer_to_merge).  The dup op keys probably won't, though...
>> except maybe they will because the values are small and more of them will
>> fit into the memtables.  But then
>>
>> 3- If we have more keys and smaller values, then the CPU overhead will be
>> higher again.
>>
>> For PG logs, I didn't really expect that the dedup style would help; I was
>> only thinking about the deferred keys.  I wonder if it would make sense to
>> specify a handful of key prefixes to attempt dedup on, and not bother on
>> the others?
>
>
> Deferred keys seem to be a much smaller part of the problem right now than
> pglog.  At least based on what I'm seeing at the moment with NVMe testing.
> Regarding dedup, it's probably worth testing at the very least.
I did following tests: all data in default column family. Set
min_write_buffer_to_merge to 2, check the size of kinds of data
written into L0 SST files.
>From the data, onodes and deferred data can be removed a lot in dedup style.

Data written into L0 SST files:

4k random writes (unit: MB)
FlushStyle      Omap              onodes            deferred           others
merge       22431.56        23224.54       1530.105          0.906106
dedup       22188.28        14161.18        12.68681         0.90906

16k random writes (unit: MB)
FlushStyle      Omap              onodes            deferred           others
merge           19260.20          8230.02           0                    1914.50
dedup           19154.92          2603.90           0
   2517.15

Note here: for others type, which use "merge" operation, dedup style
can't make it more efficient. In later, we can set it in separate CF,
use default merge flush style.

>
>>
>> Also, there is the question of where the CPU time is spent.
>
>
> Indeed, but if we can reduce the memtable size it means we save CPU in other
> areas.  Like you say below, it's complicated.
>>
>>
>> 1- Big memtables means we spend more time in submit_transaction, called by
>> the kv_sync_thread, which is a bottleneck.
>
>
> At least on NVMe we see it pretty regularly in the wallclock traces.  I need
> to retest with Radoslav and Adam's hugepages PR to get a feel for how bad it
> is after that.
>
>>
>> 2- Higher dedup style flush CPU usage is spent in the compaction thread(s)
>> (I think?), which are asynchronous.
>
>
> L0 compaction is single threaded though so we must be careful....
>
>>
>> At the end of the day I think we need to use less CPU total, so the
>> optimization of the above factors is a bit complicated.  OTOH if the goal
>> is IOPS at whatever cost it'll probably mean a slightly different choice.
>
>
> I guess we should consider the trends.  Lots of cores, lots of flash cells.
> How do we balance high throughput and low latency?
>
>>
>> I would *expect* that if we go from, say, 256mb tables to 64mb tables and
>> dedup of <= 4 of them, then we'll see a modest net reduction of total CPU
>> *and* a shift to the compaction threads.
>
>
> It seems like based on Lisa's test results that's too short lived? Maybe I'm
> not understanding what you mean?
>
>>
>> And changing the pg log min entries will counterintuitively increase the
>> costs of insertion and dedup flush because more keys will fit in the same
>> amount of memtable... but if we reduce the memtable size at the same time
>> we might get a win there too?  Maybe?
>
>
> There's too much variability here to theorycraft it and your "maybe"
> statement confirms for me. ;)  We need to get a better handle on what's
> going on.
>
>>
>> Lisa, do you think limiting the dedup check during flush to specific
>> prefixes would make sense as a general capability?  If so, we could target
>> this *just* at the high-value keys (e.g., deferred writes) and avoid
>> incurring very much additional overhead for the key ranges that aren't
>> sure bets.
The easiest way to do it is to set data in different CFs, and use
different flush style(dedup or merge) in different CFs.

>
>
> At least in my testing deferred writes during rbd 4k random writes are
> almost negligible:
>
> http://pad.ceph.com/p/performance_weekly
>
> I suspect it's all going to be about OMAP.  We need a really big WAL that
> can keep OMAP around for a long time while quickly flushing object data into
> small memtables.  On disk it's a big deal that this gets layed out
> sequentially but on flash I'm wondering if we'd be better off with a
> separate WAL for OMAP (a different rocksdb shard or different data store
> entirely).
Yes, OMAP data is main data written into L0 SST.

Data written into every memtable: (uint: MB)
IO load          omap          ondes          deferred          others
4k RW          37584          85253          323887          250
16k RW        33687          73458          0                   3500

In merge flush style with min_buffer_to_merge=2.
Data written into every L0 SST: (unit MB)
IO load     Omap              onodes            deferred           others
4k RW       22188.28        14161.18        12.68681         0.90906
16k RW     19260.20          8230.02           0                    1914.50

>
> Mark
>
>
>>
>> sage
>>
>>
>>>> The above KV operation sequences come from 4k random writes in 30mins.
>>>> Overall, the Rocksdb dedup package can decrease the data written into L0
>>>> SST, but it needs more comparison. In my opinion, whether to use dedup,
>>>> it
>>>> depends on the configuration of the OSD host: whether disk is over busy
>>>> or
>>>> CPU is over busy.
>>>
>>>
>>> Do you have any insight into how much CPU overhead it adds?
>>>
>>>>
>>>> Best wishes
>>>> Lisa
>
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-- 
Best wishes
Lisa
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