Re: Work update related to rocksdb

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On Tue, 17 Oct 2017, xiaoyan li wrote:
> Hi Sage and Mark,
> A question here: OMAP pg logs are added by "set", are they only
> deleted by rm_range_keys in BlueStore?
> https://github.com/ceph/ceph/pull/18279/files

Ooh, I didn't realize we weren't doing this already--we should definitely 
merge this patch.  But:

> If yes, maybe when dedup, we don't need to compare the keys in all
> memtables, we just compare keys in current memtable with rm_range_keys
> in later memtables?

They are currently deleted explicitly by key name by the OSD code; it 
doesn't call the range-based delete method.  Radoslaw had a test branch 
last week that tried using rm_range_keys instead but he didn't see any 
real difference... presumably because we didn't realize the bluestore omap 
code wasn't passing a range delete down to KeyValuDB!  We should retest on 
top of your change.

Thanks!
sage



 > 
> 
> On Tue, Oct 17, 2017 at 10:18 AM, xiaoyan li <wisher2003@xxxxxxxxx> wrote:
> > Hi Sage and Mark,
> > Following tests results I give are tested based on KV sequences got
> > from librbd+fio 4k or 16k random writes in 30 mins.
> > In my opinion, we may use dedup flush style for onodes and deferred
> > data, but use default merge flush style for other data.
> >
> > On Mon, Oct 16, 2017 at 9:50 PM, Mark Nelson <mnelson@xxxxxxxxxx> wrote:
> >>
> >>
> >> On 10/16/2017 08:28 AM, Sage Weil wrote:
> >>>
> >>> [adding ceph-devel]
> >>>
> >>> On Mon, 16 Oct 2017, Mark Nelson wrote:
> >>>>
> >>>> Hi Lisa,
> >>>>
> >>>> Excellent testing!   This is exactly what we were trying to understand.
> >>>>
> >>>> On 10/16/2017 12:55 AM, Li, Xiaoyan wrote:
> >>>>>
> >>>>> Hi Mark,
> >>>>>
> >>>>> Based on my testing, when setting min_write_buffer_number_to_merge as 2,
> >>>>> the
> >>>>> onodes and deferred data written into L0 SST can decreased a lot with my
> >>>>> rocksdb dedup package.
> >>>>>
> >>>>> But for omap data, it needs to span more memtables. I tested omap data
> >>>>> in
> >>>>> separate column family. From the data, you can see when
> >>>>> min_write_buffer_number_to_merge is set to 4, the data written into L0
> >>>>> SST
> >>>>> is good. That means it has to compare current memTable to flush with
> >>>>> later 3
> >>>>> memtables recursively.
> >>>>> kFlushStyleDedup is to new flush style in my rocksdb dedup package.
> >>>>> kFlushStyleMerge is current flush style in master branch.
> >>>>>
> >>>>> But this is just considered from data written into L0. With more
> >>>>> memtables
> >>>>> to compare, it sacrifices CPU and computing time.
> >>>>>
> >>>>> Memtable size: 256MB
> >>>>> max_write_buffer_number min_write_buffer_number_to_merge
> >>>>> flush_style     Omap data written into L0 SST(unit: MB)
> >>>>> 16      8       kFlushStyleMerge        7665
> >>>>> 16      8       kFlushStyleDedup        3770
> >>>>> 8       4       kFlushStyleMerge        11470
> >>>>> 8       4       kFlushStyleDedup        3922
> >>>>> 6       3       kFlushStyleMerge        14059
> >>>>> 6       3       kFlushStyleDedup        5001
> >>>>> 4       2       kFlushStyleMerge        18683
> >>>>> 4       2       kFlushStyleDedup        15394
> >>>>
> >>>>
> >>>> Is this only omap data or all data?  It looks like the 6/3 or 8/4 is
> >>>> still
> >>>> probably the optimal point (And the improvements are quite noticeable!).
> > This is only omap data. Dedup can decrease data written into L0 SST,
> > but it needs to compare too many memtables.
> >
> >>>> Sadly we were hoping we might be able to get away with smaller memtables
> >>>> (say
> >>>> 64MB) with KFlushStyleDedup.  It looks like that might not be the case
> >>>> unless
> >>>> we increase the number very high.
> >>>>
> >>>> Sage, this is going to be even worse if we try to keep more pglog entries
> >>>> around on flash OSD backends?
> >>>
> >>>
> >>> I think there are three or more factors at play here:
> >>>
> >>> 1- If we reduce the memtable size, the CPU cost of insertion (baseline)
> >>> and the dedup cost will go down.
> >>>
> >>> 2- If we switch to a small min pg log entries, then most pg log keys
> >>> *will* fall into the smaller window (of small memtables * small
> >>> min_write_buffer_to_merge).  The dup op keys probably won't, though...
> >>> except maybe they will because the values are small and more of them will
> >>> fit into the memtables.  But then
> >>>
> >>> 3- If we have more keys and smaller values, then the CPU overhead will be
> >>> higher again.
> >>>
> >>> For PG logs, I didn't really expect that the dedup style would help; I was
> >>> only thinking about the deferred keys.  I wonder if it would make sense to
> >>> specify a handful of key prefixes to attempt dedup on, and not bother on
> >>> the others?
> >>
> >>
> >> Deferred keys seem to be a much smaller part of the problem right now than
> >> pglog.  At least based on what I'm seeing at the moment with NVMe testing.
> >> Regarding dedup, it's probably worth testing at the very least.
> > I did following tests: all data in default column family. Set
> > min_write_buffer_to_merge to 2, check the size of kinds of data
> > written into L0 SST files.
> > From the data, onodes and deferred data can be removed a lot in dedup style.
> >
> > Data written into L0 SST files:
> >
> > 4k random writes (unit: MB)
> > FlushStyle      Omap              onodes            deferred           others
> > merge       22431.56        23224.54       1530.105          0.906106
> > dedup       22188.28        14161.18        12.68681         0.90906
> >
> > 16k random writes (unit: MB)
> > FlushStyle      Omap              onodes            deferred           others
> > merge           19260.20          8230.02           0                    1914.50
> > dedup           19154.92          2603.90           0
> >    2517.15
> >
> > Note here: for others type, which use "merge" operation, dedup style
> > can't make it more efficient. In later, we can set it in separate CF,
> > use default merge flush style.
> >
> >>
> >>>
> >>> Also, there is the question of where the CPU time is spent.
> >>
> >>
> >> Indeed, but if we can reduce the memtable size it means we save CPU in other
> >> areas.  Like you say below, it's complicated.
> >>>
> >>>
> >>> 1- Big memtables means we spend more time in submit_transaction, called by
> >>> the kv_sync_thread, which is a bottleneck.
> >>
> >>
> >> At least on NVMe we see it pretty regularly in the wallclock traces.  I need
> >> to retest with Radoslav and Adam's hugepages PR to get a feel for how bad it
> >> is after that.
> >>
> >>>
> >>> 2- Higher dedup style flush CPU usage is spent in the compaction thread(s)
> >>> (I think?), which are asynchronous.
> >>
> >>
> >> L0 compaction is single threaded though so we must be careful....
> >>
> >>>
> >>> At the end of the day I think we need to use less CPU total, so the
> >>> optimization of the above factors is a bit complicated.  OTOH if the goal
> >>> is IOPS at whatever cost it'll probably mean a slightly different choice.
> >>
> >>
> >> I guess we should consider the trends.  Lots of cores, lots of flash cells.
> >> How do we balance high throughput and low latency?
> >>
> >>>
> >>> I would *expect* that if we go from, say, 256mb tables to 64mb tables and
> >>> dedup of <= 4 of them, then we'll see a modest net reduction of total CPU
> >>> *and* a shift to the compaction threads.
> >>
> >>
> >> It seems like based on Lisa's test results that's too short lived? Maybe I'm
> >> not understanding what you mean?
> >>
> >>>
> >>> And changing the pg log min entries will counterintuitively increase the
> >>> costs of insertion and dedup flush because more keys will fit in the same
> >>> amount of memtable... but if we reduce the memtable size at the same time
> >>> we might get a win there too?  Maybe?
> >>
> >>
> >> There's too much variability here to theorycraft it and your "maybe"
> >> statement confirms for me. ;)  We need to get a better handle on what's
> >> going on.
> >>
> >>>
> >>> Lisa, do you think limiting the dedup check during flush to specific
> >>> prefixes would make sense as a general capability?  If so, we could target
> >>> this *just* at the high-value keys (e.g., deferred writes) and avoid
> >>> incurring very much additional overhead for the key ranges that aren't
> >>> sure bets.
> > The easiest way to do it is to set data in different CFs, and use
> > different flush style(dedup or merge) in different CFs.
> >
> >>
> >>
> >> At least in my testing deferred writes during rbd 4k random writes are
> >> almost negligible:
> >>
> >> http://pad.ceph.com/p/performance_weekly
> >>
> >> I suspect it's all going to be about OMAP.  We need a really big WAL that
> >> can keep OMAP around for a long time while quickly flushing object data into
> >> small memtables.  On disk it's a big deal that this gets layed out
> >> sequentially but on flash I'm wondering if we'd be better off with a
> >> separate WAL for OMAP (a different rocksdb shard or different data store
> >> entirely).
> > Yes, OMAP data is main data written into L0 SST.
> >
> > Data written into every memtable: (uint: MB)
> > IO load          omap          ondes          deferred          others
> > 4k RW          37584          85253          323887          250
> > 16k RW        33687          73458          0                   3500
> >
> > In merge flush style with min_buffer_to_merge=2.
> > Data written into every L0 SST: (unit MB)
> > IO load     Omap              onodes            deferred           others
> > 4k RW       22188.28        14161.18        12.68681         0.90906
> > 16k RW     19260.20          8230.02           0                    1914.50
> >
> >>
> >> Mark
> >>
> >>
> >>>
> >>> sage
> >>>
> >>>
> >>>>> The above KV operation sequences come from 4k random writes in 30mins.
> >>>>> Overall, the Rocksdb dedup package can decrease the data written into L0
> >>>>> SST, but it needs more comparison. In my opinion, whether to use dedup,
> >>>>> it
> >>>>> depends on the configuration of the OSD host: whether disk is over busy
> >>>>> or
> >>>>> CPU is over busy.
> >>>>
> >>>>
> >>>> Do you have any insight into how much CPU overhead it adds?
> >>>>
> >>>>>
> >>>>> Best wishes
> >>>>> Lisa
> >>
> >> --
> >> To unsubscribe from this list: send the line "unsubscribe ceph-devel" in
> >> the body of a message to majordomo@xxxxxxxxxxxxxxx
> >> More majordomo info at  http://vger.kernel.org/majordomo-info.html
> >
> >
> >
> > --
> > Best wishes
> > Lisa
> 
> 
> 
> -- 
> Best wishes
> Lisa
> 
> 
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