On Fedora 8 with rpm-devel-4.4.2.2-7.fc8, I'm having trouble getting a
package to build. The program compiles in a shell if I just do the
usual configure & make & make install, but when I try to use a spec
file to build it, a lot of macros come into play and I'm having a hard
time tracking them down.
Please look down 30 lines for the extract debug-info line that
suddenly inserts the letters "/cd" into the middle of the path, and
then "duplicate" files get sent to /usr... and /cd/usr... in the
buildroot. I'm quite baffled!
test -z "/usr/lib/pkgconfig" || /bin/mkdir -p
"/var/tmp/jags-1.0.2-root/usr/lib/pkgconfig"
/usr/bin/install -c -m 644 'jags.pc'
'/var/tmp/jags-1.0.2-root/usr/lib/pkgconfig/jags.pc'
make[2]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/etc'
make[1]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/etc'
Making install in win32
make[1]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
Making install in lapack
make[2]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
make[3]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
make[2]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
make[2]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
make[3]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
make[2]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
make[1]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
make[1]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
make[2]: Entering directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
make[1]: Leaving directory
`/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
+ /usr/lib/rpm/find-debuginfo.sh
/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2
extracting debug info from /var/tmp/jags-1.0.2-root/usr/libexec/jags-terminal
extracting debug info from /var/tmp/jags-1.0.2-root/usr/lib/libjags.so.1.0.2
extracting debug info from /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/bugs.so
extracting debug info from /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/dic.so
extracting debug info from /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/msm.so
extracting debug info from /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/mix.so
extracting debug info from
/var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/basemod.so
extracting debug info from /var/tmp/jags-1.0.2-root/usr/lib/libjrmath.so.0.0.0
extracting debug info from /var/tmp/jags-1.0.2-root/cd/usr/libexec/jags-terminal
*** WARNING: identical binaries are copied, not linked:
/cd/usr/libexec/jags-terminal
and /usr/libexec/jags-terminal
extracting debug info from /var/tmp/jags-1.0.2-root/cd/usr/lib/libjags.so.1.0.2
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/libjags.so.1.0.2
and /usr/lib/libjags.so.1.0.2
extracting debug info from
/var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/bugs.so
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/JAGS/modules/bugs.so
and /usr/lib/JAGS/modules/bugs.so
extracting debug info from
/var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/dic.so
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/JAGS/modules/dic.so
and /usr/lib/JAGS/modules/dic.so
extracting debug info from
/var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/msm.so
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/JAGS/modules/msm.so
and /usr/lib/JAGS/modules/msm.so
extracting debug info from
/var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/mix.so
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/JAGS/modules/mix.so
and /usr/lib/JAGS/modules/mix.so
extracting debug info from
/var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/basemod.so
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/JAGS/modules/basemod.so
and /usr/lib/JAGS/modules/basemod.so
extracting debug info from
/var/tmp/jags-1.0.2-root/cd/usr/lib/libjrmath.so.0.0.0
*** WARNING: identical binaries are copied, not linked:
/cd/usr/lib/libjrmath.so.0.0.0
and /usr/lib/libjrmath.so.0.0.0
symlinked /usr/lib/debug/usr/lib/libjrmath.so.0.0.0.debug to
/usr/lib/debug/usr/lib/libjrmath.so.debug
symlinked /usr/lib/debug/usr/lib/libjags.so.1.0.2.debug to
/usr/lib/debug/usr/lib/libjags.so.debug
symlinked /usr/lib/debug/usr/lib/libjags.so.1.0.2.debug to
/usr/lib/debug/usr/lib/libjags.so.1.debug
symlinked /usr/lib/debug/usr/lib/libjrmath.so.0.0.0.debug to
/usr/lib/debug/usr/lib/libjrmath.so.0.debug
symlinked /usr/lib/debug/cd/usr/lib/libjrmath.so.0.0.0.debug to
/usr/lib/debug/cd/usr/lib/libjrmath.so.debug
symlinked /usr/lib/debug/cd/usr/lib/libjags.so.1.0.2.debug to
/usr/lib/debug/cd/usr/lib/libjags.so.debug
symlinked /usr/lib/debug/cd/usr/lib/libjags.so.1.0.2.debug to
/usr/lib/debug/cd/usr/lib/libjags.so.1.debug
symlinked /usr/lib/debug/cd/usr/lib/libjrmath.so.0.0.0.debug to
/usr/lib/debug/cd/usr/lib/libjrmath.so.0.debug
cpio: JAGS-0.98.0/src/lib/compiler/scanner.cc: Cannot stat: No such
file or directory
cpio: JAGS-1.0.2/src/terminal/.libs/jags-terminalS.c: Cannot stat: No
such file or directory
2653 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/brp-python-bytecompile
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Processing files: jags-1.0.2-1f8pj
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.15765
+ umask 022
+ cd /home/pauljohn/LinuxDownloads/redhat/BUILD
+ cd JAGS-1.0.2
+ DOCDIR=/var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
+ export DOCDIR
+ rm -rf /var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
+ /bin/mkdir -p /var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
+ cp -pr AUTHORS COPYING ChangeLog INSTALL NEWS README TODO
/var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
+ exit 0
Provides: basemod.so basemod.so.debug bugs.so bugs.so.debug dic.so
dic.so.debug libjags.so.1 libjags.so.1.0.2.debug libjrmath.so.0
libjrmath.so.0.0.0.debug mix.so mix.so.debug msm.so msm.so.debug
Requires(interp): /bin/sh /bin/sh /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(pre): /bin/sh
Requires(post): /sbin/ldconfig ldconfig
Requires(preun): /bin/sh
Requires(postun): /sbin/ldconfig ldconfig
Requires: /bin/sh basemod.so bugs.so dic.so lapack libRmath
libblas.so.3 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3)
libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1
libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_4.0.0) libjags.so.1
libjrmath.so.0 liblapack.so.3 libm.so.6 libm.so.6(GLIBC_2.0)
libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.1)
libstdc++.so.6(GLIBCXX_3.4) mix.so msm.so rtld(GNU_HASH)
Processing files: jags-debuginfo-1.0.2-1f8pj
Provides: basemod.so.debug bugs.so.debug dic.so.debug
libjags.so.1.0.2.debug libjrmath.so.0.0.0.debug mix.so.debug
msm.so.debug
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: basemod.so bugs.so dic.so libjags.so.1 libjrmath.so.0 mix.so msm.so
Checking for unpackaged file(s): /usr/lib/rpm/check-files
/var/tmp/jags-1.0.2-root
error: Installed (but unpackaged) file(s) found:
/cd/usr/bin/jags
/cd/usr/include/JAGS/Console.h
/cd/usr/include/JAGS/JRmath.h
/cd/usr/include/JAGS/Module.h
/cd/usr/include/JAGS/compiler/Compiler.h
/cd/usr/include/JAGS/compiler/ConstantFactory.h
/cd/usr/include/JAGS/compiler/Counter.h
/cd/usr/include/JAGS/compiler/CounterTab.h
/cd/usr/include/JAGS/compiler/LogicalFactory.h
/cd/usr/include/JAGS/compiler/MixtureFactory.h
/cd/usr/include/JAGS/compiler/NodeFactory.h
/cd/usr/include/JAGS/compiler/ParseTree.h
/cd/usr/include/JAGS/distribution/DistScalar.h
/cd/usr/include/JAGS/distribution/DistScalarRmath.h
/cd/usr/include/JAGS/distribution/DistTab.h
/cd/usr/include/JAGS/distribution/Distribution.h
/cd/usr/include/JAGS/distribution/RNG.h
/cd/usr/include/JAGS/distribution/RNGFactory.h
/cd/usr/include/JAGS/distribution/RmathRNG.h
/cd/usr/include/JAGS/function/FuncTab.h
/cd/usr/include/JAGS/function/Function.h
/cd/usr/include/JAGS/function/InverseLinkFunc.h
/cd/usr/include/JAGS/function/ScalarFunc.h
/cd/usr/include/JAGS/graph/AggNode.h
/cd/usr/include/JAGS/graph/ConstantNode.h
/cd/usr/include/JAGS/graph/DeterministicNode.h
/cd/usr/include/JAGS/graph/DevianceNode.h
/cd/usr/include/JAGS/graph/Graph.h
/cd/usr/include/JAGS/graph/GraphMarks.h
/cd/usr/include/JAGS/graph/LogicalNode.h
/cd/usr/include/JAGS/graph/MixtureNode.h
/cd/usr/include/JAGS/graph/Node.h
/cd/usr/include/JAGS/graph/NodeError.h
/cd/usr/include/JAGS/graph/StochasticNode.h
/cd/usr/include/JAGS/model/BUGSModel.h
/cd/usr/include/JAGS/model/Model.h
/cd/usr/include/JAGS/model/Monitor.h
/cd/usr/include/JAGS/model/MonitorFactory.h
/cd/usr/include/JAGS/model/NodeArray.h
/cd/usr/include/JAGS/model/SymTab.h
/cd/usr/include/JAGS/sampler/DensityMethod.h
/cd/usr/include/JAGS/sampler/DensitySampler.h
/cd/usr/include/JAGS/sampler/Linear.h
/cd/usr/include/JAGS/sampler/Metropolis.h
/cd/usr/include/JAGS/sampler/RWMetropolis.h
/cd/usr/include/JAGS/sampler/Sampler.h
/cd/usr/include/JAGS/sampler/SamplerFactory.h
/cd/usr/include/JAGS/sampler/SingletonFactory.h
/cd/usr/include/JAGS/sampler/Slicer.h
/cd/usr/include/JAGS/sarray/Range.h
/cd/usr/include/JAGS/sarray/RangeIterator.h
/cd/usr/include/JAGS/sarray/SArray.h
/cd/usr/include/JAGS/util/dim.h
/cd/usr/include/JAGS/util/integer.h
/cd/usr/include/JAGS/util/logical.h
/cd/usr/include/JAGS/util/nainf.h
/cd/usr/lib/JAGS/modules/basemod.la
/cd/usr/lib/JAGS/modules/basemod.so
/cd/usr/lib/JAGS/modules/bugs.la
/cd/usr/lib/JAGS/modules/bugs.so
/cd/usr/lib/JAGS/modules/dic.la
/cd/usr/lib/JAGS/modules/dic.so
/cd/usr/lib/JAGS/modules/mix.la
/cd/usr/lib/JAGS/modules/mix.so
/cd/usr/lib/JAGS/modules/msm.la
/cd/usr/lib/JAGS/modules/msm.so
/cd/usr/lib/libjags.la
/cd/usr/lib/libjags.so
/cd/usr/lib/libjags.so.1
/cd/usr/lib/libjags.so.1.0.2
/cd/usr/lib/libjrmath.la
/cd/usr/lib/libjrmath.so
/cd/usr/lib/libjrmath.so.0
/cd/usr/lib/libjrmath.so.0.0.0
/cd/usr/lib/pkgconfig/jags.pc
/cd/usr/libexec/jags-terminal
/usr/libexec/jags-terminal
RPM build errors:
Installed (but unpackaged) file(s) found:
/cd/usr/bin/jags
/cd/usr/include/JAGS/Console.h
/cd/usr/include/JAGS/JRmath.h
/cd/usr/include/JAGS/Module.h
/cd/usr/include/JAGS/compiler/Compiler.h
/cd/usr/include/JAGS/compiler/ConstantFactory.h
/cd/usr/include/JAGS/compiler/Counter.h
/cd/usr/include/JAGS/compiler/CounterTab.h
/cd/usr/include/JAGS/compiler/LogicalFactory.h
/cd/usr/include/JAGS/compiler/MixtureFactory.h
/cd/usr/include/JAGS/compiler/NodeFactory.h
/cd/usr/include/JAGS/compiler/ParseTree.h
/cd/usr/include/JAGS/distribution/DistScalar.h
/cd/usr/include/JAGS/distribution/DistScalarRmath.h
/cd/usr/include/JAGS/distribution/DistTab.h
/cd/usr/include/JAGS/distribution/Distribution.h
/cd/usr/include/JAGS/distribution/RNG.h
/cd/usr/include/JAGS/distribution/RNGFactory.h
/cd/usr/include/JAGS/distribution/RmathRNG.h
/cd/usr/include/JAGS/function/FuncTab.h
/cd/usr/include/JAGS/function/Function.h
/cd/usr/include/JAGS/function/InverseLinkFunc.h
/cd/usr/include/JAGS/function/ScalarFunc.h
/cd/usr/include/JAGS/graph/AggNode.h
/cd/usr/include/JAGS/graph/ConstantNode.h
/cd/usr/include/JAGS/graph/DeterministicNode.h
/cd/usr/include/JAGS/graph/DevianceNode.h
/cd/usr/include/JAGS/graph/Graph.h
/cd/usr/include/JAGS/graph/GraphMarks.h
/cd/usr/include/JAGS/graph/LogicalNode.h
/cd/usr/include/JAGS/graph/MixtureNode.h
/cd/usr/include/JAGS/graph/Node.h
/cd/usr/include/JAGS/graph/NodeError.h
/cd/usr/include/JAGS/graph/StochasticNode.h
/cd/usr/include/JAGS/model/BUGSModel.h
/cd/usr/include/JAGS/model/Model.h
/cd/usr/include/JAGS/model/Monitor.h
/cd/usr/include/JAGS/model/MonitorFactory.h
/cd/usr/include/JAGS/model/NodeArray.h
/cd/usr/include/JAGS/model/SymTab.h
/cd/usr/include/JAGS/sampler/DensityMethod.h
/cd/usr/include/JAGS/sampler/DensitySampler.h
/cd/usr/include/JAGS/sampler/Linear.h
/cd/usr/include/JAGS/sampler/Metropolis.h
/cd/usr/include/JAGS/sampler/RWMetropolis.h
/cd/usr/include/JAGS/sampler/Sampler.h
/cd/usr/include/JAGS/sampler/SamplerFactory.h
/cd/usr/include/JAGS/sampler/SingletonFactory.h
/cd/usr/include/JAGS/sampler/Slicer.h
/cd/usr/include/JAGS/sarray/Range.h
/cd/usr/include/JAGS/sarray/RangeIterator.h
/cd/usr/include/JAGS/sarray/SArray.h
/cd/usr/include/JAGS/util/dim.h
/cd/usr/include/JAGS/util/integer.h
/cd/usr/include/JAGS/util/logical.h
/cd/usr/include/JAGS/util/nainf.h
/cd/usr/lib/JAGS/modules/basemod.la
/cd/usr/lib/JAGS/modules/basemod.so
/cd/usr/lib/JAGS/modules/bugs.la
/cd/usr/lib/JAGS/modules/bugs.so
/cd/usr/lib/JAGS/modules/dic.la
/cd/usr/lib/JAGS/modules/dic.so
/cd/usr/lib/JAGS/modules/mix.la
/cd/usr/lib/JAGS/modules/mix.so
/cd/usr/lib/JAGS/modules/msm.la
/cd/usr/lib/JAGS/modules/msm.so
/cd/usr/lib/libjags.la
/cd/usr/lib/libjags.so
/cd/usr/lib/libjags.so.1
/cd/usr/lib/libjags.so.1.0.2
/cd/usr/lib/libjrmath.la
/cd/usr/lib/libjrmath.so
/cd/usr/lib/libjrmath.so.0
/cd/usr/lib/libjrmath.so.0.0.0
/cd/usr/lib/pkgconfig/jags.pc
/cd/usr/libexec/jags-terminal
/usr/libexec/jags-terminal
--
Paul E. Johnson
Professor, Political Science
1541 Lilac Lane, Room 504
University of Kansas
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