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Re: error when using SELECT

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Andrew Stewart <astew@xxxxxxxxxxx> writes:
> I myself am still very new to PostgreSQL, so I'm having trouble telling 
> if there is anything wrong with the postgres transaction that is being 
> attempted by the bioperl-db maketest.  The verbose error output is as  
> follows...

> preparing SELECT statement: SELECT SUBSTRING(seq FROM ? FOR ?) FROM 
> biosequence WHERE bioentry_id = ?
> ok 30
> ok 31
> DBD::Pg::st execute failed: ERROR:  invalid escape string
> HINT:  Escape string must be empty or one character.

According to the docs, that syntax is

   The substring function with three parameters, substring(string from
   pattern for escape-character), provides extraction of a substring that
   matches an SQL regular expression pattern.

It would appear that you're supplying an empty string for the second ?
which is a no-no for this particular function.

My guess is that you are trying to port code from another database that
has a different interpretation of this syntax.

			regards, tom lane

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