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Re: Slow Query / Check Point Segments

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Greg Smith wrote:
John R Pierce wrote:
I know the database has a lot of write volume overall, and its only one of several databases running in different zones on the server. I know nothing about the SAN, I suspect its a EMC Symmetrix of some sort. Probably a generation or two behind latest. The operations people are used to running large oracle databases.

One thing you might try is making the PostgreSQL install act more like an Oracle one in terms of how it does writes. By default, PostgreSQL does its WAL writes by writing and then calling a sync method. On Solaris, you should be able to safely change this in the postgresql.conf file to be:


iostat -x 5 or 15 shows a bunch of LUNs are as much as 10% busy, but the service time stays under 50ms... this is one of the busiest of the 15 second samples over a 10 min period I'm just showing a representive sampling of the busiest LUNs out of 40, the physical storage is all raid10's on a DMX4.

extended device statistics device r/s w/s kr/s kw/s wait actv svc_t %w %b
sd1       0.0    0.0    0.0    0.0  0.0  0.0    0.0   0   0
...
ssd10     0.0   33.2    0.0  546.6  0.0  1.0   28.9   0   7
ssd11     0.0   27.7    0.0  573.9  0.0  0.9   34.0   0   6
ssd12     0.0   56.2    0.0  576.6  0.0  1.5   26.5   0  10
ssd13     0.0   30.8    0.0  505.5  0.0  0.9   28.7   0   7
ssd14     0.0   42.9    0.0  498.4  0.0  1.4   32.9   0   9
ssd15     0.0   38.3    0.0  557.6  0.0  1.7   44.0   0   8
ssd16     0.0   41.1    0.0  520.5  0.0  1.3   32.0   0   9
ssd17     0.0   52.4    0.0  528.6  0.0  1.3   24.8   0  10
ssd18     0.0   29.0    0.0  503.9  0.0  1.2   41.4   0   7
...

most show near 0% busy and 10/th that volume of writes or reads.

zpool iostat 15 also shows this io peak for about a minute or two every few minutes but its nowhere near hardware capacity

$ zpool iostat 15
              capacity     operations    bandwidth
pool         used  avail   read  write   read  write
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G    109    386  1.16M  6.98M
data-p2   340M  33.2G      0      2    491  36.8K
----------  -----  -----  -----  -----  -----  -----
..............
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     40      6   527K   164K
data-p2   341M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     36  1.35K   306K  19.2M
data-p2   341M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     45    585   445K  2.01M
data-p2   341M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     47     38   410K  1.05M
data-p2   341M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     68    145   745K  4.11M
data-p2   341M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     38    168   311K  4.60M
data-p2   340M  33.2G      0      9      0   294K
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     55     65   504K  1.18M
data-p2   340M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G      5  1.07K  43.1K  9.71M
data-p2   340M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
data-p1   268G   101G     46      7   549K   179K
data-p2   340M  33.2G      0      0      0      0
----------  -----  -----  -----  -----  -----  -----
^C


wal_sync_method=open_datasync

Which I don't think is the default (you can confirm with "show wal_sync_method;" via psql on your database). That will use O_DSYNC writes, which are more like how Oracle approaches this and therefore potentially a better tuned path for your install.

thats what its set to now.


More on this subject, including idea for further tweaking

http://www.postgresql.org/docs/8.4/static/runtime-config-wal.html
http://blogs.sun.com/jkshah/entry/postgresql_wal_sync_method_and
http://www.westnet.com/~gsmith/content/postgresql/TuningPGWAL.htm

From what you've shown and described, I'm not sure what other PostgreSQL tuning you might do to improve the specific symptoms you're seeing. The particular issue you've got I'd normally start attacking on the filesystem and hardware side of things. There's a reason why many people avoid SANs in this context, there's a lot of ways you can screw up in this particular aspect of their performance relative to what you get with direct attached storage, and it's hard to tell which you've run into when a problem does pop up.


The SAN is a dmx4, and it seems to be damn fast by all low level tests i can run. this database is really getting hammered on. a couple of the tables take 8-12 hours to vacuum. these are tables with many millions of small rows that are updated randomly at a high speed, using a rather large primary key (the PK is 6 or 8 short text fields, the 'data' is a couple counters). The performance got a lot better when we set these tables for fill factor of 50 but the table size doubled (duh) which apparently produced its own problems so they are trying fill factor 70. there's probably 100 connections.

cpu and vm usage for a couple minutes...

$ vmstat 15
kthr      memory            page            disk          faults      cpu
r b w swap free re mf pi po fr de sr s1 sd sd sd in sy cs us sy id 2 0 0 30980016 1555616 20 260 40 0 0 0 0 -0 4 4 5 2231 21989 11168 25 4 72 0 0 0 30765664 1227536 57 368 185 0 0 0 0 0 8 13 5 1366 64055 48764 34 7 59 2 0 0 30757576 1218784 0 12 0 0 0 0 0 0 8 8 9 7137 82432 58548 53 12 36 3 0 0 30750528 1211736 0 15 0 0 0 0 0 0 39 44 35 2959 85558 64763 40 10 51 0 0 0 30745624 1206832 0 9 0 0 0 0 0 0 0 0 1 1253 65697 51775 32 7 62 0 0 0 30739896 1201104 21 127 97 0 0 0 0 0 3 2 5 1271 67217 52826 34 7 59 1 0 0 30729832 1191592 32 296 0 0 0 0 0 0 0 1 2 5030 82152 53824 45 12 43 3 0 0 30722528 1184328 28 239 0 0 0 0 0 0 11 10 15 2201 87922 66675 38 10 52 1 0 0 30720800 1181984 0 12 0 0 0 0 0 0 36 34 60 1970 68696 52730 38 8 54 0 0 0 30716152 1177320 34 248 259 0 0 0 0 0 3 3 10 1139 71591 55853 31 8 61 3 0 0 30708216 1169312 0 13 0 0 0 0 0 0 6 6 6 9114 90349 60455 56 15 29 5 0 0 30700448 1161544 0 15 0 0 0 0 0 0 29 29 36 3196 61634 34290 47 11 41 0 0 0 30694528 1155624 0 10 0 0 0 0 0 0 35 35 32 1343 62273 48045 33 7 60 0 0 0 30686688 1148592 36 282 171 0 0 0 0 0 2 2 5 1068 75579 59492 30 8 62


I'm thinking its zfs tuning we need to do, not physical disk IO, and thats a topic for another list, I guess. I know quite a lot has been done, using different zfs block sizes for different tablespaces, putting index and data in different tablespaces, and so forth.




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