Thanks for the replies. I'll explore suggestions given by Rami and Valdis.
In the mean time,I think I found the lines(linux-3.9.3/Makefile) creating
overwriting the config file.
# If .config is newer than include/config/auto.conf, someone tinkered
# with it and forgot to run make oldconfig.
# if auto.conf.cmd is missing then we are probably in a cleaned tree so
# we execute the config step to be sure to catch updated Kconfig files
include/config/%.conf: $(KCONFIG_CONFIG) include/config/auto.conf.cmd
$(Q)$(MAKE) -f $(srctree)/Makefile silentoldconfig
when I comment out above lines the config file was not overwritten.
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Cheers,
Lakshmipathi.G
FOSS Programmer.
www.giis.co.in
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