Loud "pop" coming from hard drive on reboot

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When I reboot my notebook, it powers off and powers back on.
On poweroff a loud snapping noise seems to be coming from the
hard drive. Today I noticed there is no "shutdown: hda" on
the console when I reboot. Whne I do a normal poweroff the
message is displayed and there is no noise. Should the IDE
code be changed so it always shuts down the drive?
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