If the CVS or SVN repository has an FTP or HTTP space you can access the files anyway. However, if they're strictly by their own protocols then you have to use a client offline or online (via Web interface if the site chooses to offer one; WebSVN for Subversion for example).
There is no fear of anything with VCS tools. Security people install these all the time:
http://tortoisesvn.tigris.org/
http://www.tortoisecvs.org/
http://code.google.com/p/tortoisegit/
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