Need help with collateral damage after migrating from 2.5.10 to 3.0.13 on Ubuntu

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Hello all,
I'd like to ask for some help.
Once again I failed and trusted Ubuntu to upgrade the system from 18.04 to 20.04, and as it did before a few times already, it f#&ed up Cyrus again... Dunno why they can't do it properly...
Only after that did I read a bit about the upgrade process... Too late I guess.
Anyway, I have a kinda "test" system with only one mailbox on it and a shared folder with nothing in it. After the upgrade, all the mail was gone, user's mailbox seemed empty but I still saw the shared folder. But the files are still there in the mailbox with all the folder structure and everything (so in the worst case I can just re-import them through a client or something). I did try a "reconstruct -V max" and update quotas and update ACLs, to no avail. I can not see anything under that mailbox. But I can see the structure through Webmin for example.
Is there a way to fix this mess or should I just delete the mailbox and re-import the mail into it?
The problem is, I have another server with the exact same configuration and that has a lot of mail on it, and that too needs to be upgraded at some point. I'd like to avoid this there if possible.
Thanks for any help.
PS: I'm not at all knowledgeable about Cyrus. Bear with me. :)

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