Hi, this is the first time I report an issue in git so I hope I'm doing it right. I have experienced some unexpected behaviour with git stash pop --quiet in git 2.24.0. I use stash in a pre-commit hook script. In it, I stash non-staged changes to keep the working directory clean while running some linters, then I restore the stash by running pop, but after the recent git update I noticed that it stages all previously checked files as deleted. Steps to reproduce: mkdir test-git-stash cd test-git-stash/ git init echo foo > foo.txt git add . && git commit -m 'init' echo bar > foo.txt git stash save --quiet --include-untracked --keep-index git stash pop --quiet git status This will unexpectedly output: On branch master Changes to be committed: (use "git restore --staged <file>..." to unstage) deleted: foo.txt Untracked files: (use "git add <file>..." to include in what will be committed) foo.txt Notice that foo.txt was staged as deleted whilst still being present on the disk. However, if I remove --quiet flag from stash pop: git restore --staged foo.txt git stash save --quiet --include-untracked --keep-index git stash pop git status Then it works as expected. It used to work as expected in git prior to 2.24.0 My OS is Ubuntu 19.04.