Hello,
I am trying to compile under Red Hat Linux using gcc. It works fine with
version 3.2.3, but throws the following errors with gcc 3.4.2:
--------------------------------------------------------------------------
g++ -fPIC -O3 -c -I. -I../openbabel-1.100.2/src -I../aura
-I/usr/java/j2sdk1.4.2_04/include -I/usr/java/j2sdk1.4.2_04/include/linux
OBBronKerboschMatcher.cpp
In file included from
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/vector:72,
from ../openbabel-1.100.2/src/mol.h:29,
from ../aura/DistanceUtilities.h:5,
from ../aura/OBAttributes.h:5,
from ../aura/OBReader.h:7,
from OBBronKerboschMatcher.h:3,
from OBBronKerboschMatcher.cpp:1:
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/stl_bvector.h:
In member function `void std::vector<bool,
_Alloc>::_M_insert_range(std::_Bit_iterator, _ForwardIterator,
_ForwardIterator, std::forward_iterator_tag)':
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/stl_bvector.h:522:
error: expected unqualified-id before '(' token
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/stl_bvector.h:
In member function `void std::vector<bool,
_Alloc>::_M_fill_insert(std::_Bit_iterator, size_t, bool)':
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/stl_bvector.h:823:
error: expected unqualified-id before '(' token
In file included from
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/vector:75,
from ../openbabel-1.100.2/src/mol.h:29,
from ../aura/DistanceUtilities.h:5,
from ../aura/OBAttributes.h:5,
from ../aura/OBReader.h:7,
from OBBronKerboschMatcher.h:3,
from OBBronKerboschMatcher.cpp:1:
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/vector.tcc:
In member function `void std::vector<_Tp,
_Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename
_Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&)':
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/vector.tcc:307:
error: expected unqualified-id before '(' token
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/vector.tcc:
In member function `void std::vector<_Tp,
_Alloc>::_M_range_insert(__gnu_cxx::__normal_iterator<typename
_Alloc::pointer, std::vector<_Tp, _Alloc> >, _ForwardIterator,
_ForwardIterator, std::forward_iterator_tag)':
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/vector.tcc:384:
error: expected unqualified-id before '(' token
In file included from
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/deque:71,
from ../openbabel-1.100.2/src/ring.h:23,
from ../openbabel-1.100.2/src/mol.h:49,
from ../aura/DistanceUtilities.h:5,
from ../aura/OBAttributes.h:5,
from ../aura/OBReader.h:7,
from OBBronKerboschMatcher.h:3,
from OBBronKerboschMatcher.cpp:1:
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/stl_deque.h:
In member function `void std::_Deque_base<_Tp,
_Alloc>::_M_initialize_map(size_t)':
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/stl_deque.h:446:
error: expected unqualified-id before '(' token
In file included from
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/deque:74,
from ../openbabel-1.100.2/src/ring.h:23,
from ../openbabel-1.100.2/src/mol.h:49,
from ../aura/DistanceUtilities.h:5,
from ../aura/OBAttributes.h:5,
from ../aura/OBReader.h:7,
from OBBronKerboschMatcher.h:3,
from OBBronKerboschMatcher.cpp:1:
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/deque.tcc:
In member function `void std::deque<_Tp,
_Alloc>::_M_reallocate_map(size_t, bool)':
/usr/local/lib/gcc/i686-pc-linux-gnu/3.4.2/../../../../include/c++/3.4.2/bits/deque.tcc:699:
error: expected unqualified-id before '(' token
make: *** [OBBronKerboschMatcher.o] Error 1
--------------------------------------------------------------------------
mol.h line 29 contains
#include <vector>
ring.h line 23 contains
#include <deque>
The strange thing is that if I compile just OBReader.cpp, it works fine!
OpenBabel has been configured with gcc3.4.2 previously.
Any ideas?
Thanks.
Stefan
