https://bugzilla.redhat.com/show_bug.cgi?id=1474958 --- Comment #13 from Christoph Junghans <junghans@xxxxxxxxx> --- (In reply to Antonio Trande from comment #12) > $ mock --no-clean -r fedora-rawhide-x86_64 --shell 'rpmlint lammps-mpich; > ldd /usr/lib64/mpich/bin/lmp' > INFO: mock.py version 1.4.3 starting (python version = 3.6.2)... > lammps-mpich.x86_64: W: spelling-error %description -l en_US biomolecules -> > bio molecules, bio-molecules, molecules > lammps-mpich.x86_64: W: spelling-error %description -l en_US mesoscopic -> > microscopic > lammps-mpich.x86_64: W: spelling-error %description -l en_US meso -> mes, > meson, mess > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Allgather > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Cart_create > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Bcast > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Op_create > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Send > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_sync > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Isend > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Initialized > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Scatterv > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Cart_shift > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_set_size > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Type_contiguous > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Scatter > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_open > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Type_free > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Barrier > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_read_at > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Group_incl > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Sendrecv > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Finalize > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Request_free > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Gather > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Rsend > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Recv > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_group > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_create > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Cart_get > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_get_size > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Abort > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_write_at > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Get_version > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Scan > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Get_processor_name > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_size > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Waitall > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Reduce_scatter > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Error_string > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Allreduce > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Allgatherv > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Type_commit > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Wtime > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Type_size > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Reduce > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_write_at_all > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Waitany > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Wait > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_dup > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Irecv > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_rank > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Init > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Get_count > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_close > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_File_read_at_all > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Alltoallv > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Op_free > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_free > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Comm_split > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Cart_rank > lammps-mpich.x86_64: W: undefined-non-weak-symbol > /usr/lib64/mpich/lib/liblammps.so.0 MPI_Gatherv > lammps-mpich.x86_64: W: unused-direct-shlib-dependency > /usr/lib64/mpich/lib/liblammps.so.0 libmpicxx.so.12 > lammps-mpich.x86_64: W: unused-direct-shlib-dependency > /usr/lib64/mpich/lib/liblammps.so.0 libmpi.so.12 > lammps-mpich.x86_64: W: unused-direct-shlib-dependency > /usr/lib64/mpich/lib/liblammps.so.0 /lib64/libquadmath.so.0 > lammps-mpich.x86_64: W: shared-lib-calls-exit > /usr/lib64/mpich/lib/liblammps.so.0 exit@GLIBC_2.2.5 > lammps-mpich.x86_64: W: no-documentation > lammps-mpich.x86_64: E: library-without-ldconfig-postin > /usr/lib64/mpich/lib/liblammps.so.0 > lammps-mpich.x86_64: E: library-without-ldconfig-postun > /usr/lib64/mpich/lib/liblammps.so.0 > 1 packages and 0 specfiles checked; 2 errors, 67 warnings. > linux-vdso.so.1 (0x00007fff90ba2000) > liblammps.so.0 => /lib64/liblammps.so.0 (0x00007f1e9ed60000) > libmpicxx.so.12 => not found > libmpi.so.12 => not found > libfftw3.so.3 => /lib64/libfftw3.so.3 (0x00007f1e9e95c000) > libpython3.6m.so.1.0 => /lib64/libpython3.6m.so.1.0 (0x00007f1e9e3fe000) > libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007f1e9e194000) > libpng16.so.16 => /lib64/libpng16.so.16 (0x00007f1e9df61000) > libz.so.1 => /lib64/libz.so.1 (0x00007f1e9dd4a000) > libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f1e9d9c2000) > libm.so.6 => /lib64/libm.so.6 (0x00007f1e9d66d000) > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f1e9d456000) > libc.so.6 => /lib64/libc.so.6 (0x00007f1e9d06f000) > libgfortran.so.4 => /lib64/libgfortran.so.4 (0x00007f1e9cc93000) > libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007f1e9ca53000) > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f1e9c834000) > libdl.so.2 => /lib64/libdl.so.2 (0x00007f1e9c630000) > libutil.so.1 => /lib64/libutil.so.1 (0x00007f1e9c42d000) > /lib64/ld-linux-x86-64.so.2 (0x000055b26aa2c000) > Finish: shell I saw that before for other mpi-enabled packages, if I recall correctly mock has no support for mpi and hence doesn't do a "module load mpi/openmpi-x86_64", which would prepend /usr/lib64/openmpi/lib to LD_LIBRARY_PATH (see module show "mpi/openmpi-x86_64") and fix the above issue. rpath aren't allowed for mpi packages either, so I am not sure how you want to fix. And setting CXX and friends won't change anything as mpicxx is internally just adding the same include paths and libraries to the flags: $ mpicxx --showme g++ -I/usr/include/openmpi-x86_64 -pthread -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -L/usr/lib64/openmpi/lib -lmpi_cxx -lmpi -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component _______________________________________________ package-review mailing list -- package-review@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-review-leave@xxxxxxxxxxxxxxxxxxxxxxx
