https://bugzilla.redhat.com/show_bug.cgi?id=1359402 --- Comment #32 from Antonio Trande <anto.trande@xxxxxxxxx> --- Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated [ ] = Manual review needed Issues: ======= - Please, remove empty sections (%check, %clean) - Since Python sub-directory is named 'coot', i think it's better naming the related packages as python2-coot. I guess, it's a nonsense packaging two symlinks, so please erase python2-coot-devel. Sorry, i had not realized this before. Also, add the 'python-provide' macro to python2-coot %{?python_provide:%python_provide python2-%{name}} - Please, don't use hardcoded-library-path: RDKIT_CXXFLAGS="-I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT" --> RDKIT_CXXFLAGS="-I%{_includedir}/rdkit -DRDKIT_HAS_CAIRO_SUPPORT" ===== MUST items ===== C/C++: [x]: Package does not contain kernel modules. [x]: Package contains no static executables. [x]: Header files in -devel subpackage, if present. [x]: ldconfig called in %post and %postun if required. [x]: Package does not contain any libtool archives (.la) [x]: Rpath absent or only used for internal libs. [x]: Development (unversioned) .so files in -devel subpackage, if present. Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "LGPL (v2.1 or later) (with incorrect FSF address)", "LGPL", "GPL (v2 or later)", "GPL (v3 or later)", "Unknown or generated", "MIT/X11 (BSD like)", "*No copyright* GPL (v3 or later)", "GPL (v2 or later) GPL (v2 or later)", "LGPL (v3 or later)", "GPL (v3 or later) GPL (v3 or later)", "GPL (v2 or later) (with incorrect FSF address)", "LGPL (v2.1 or later)", "FSF All Permissive", "FSF Unlimited". 902 files have unknown license. Detailed output of licensecheck in /home/sagitter/1359402-coot/licensecheck.txt [!]: License file installed when any subpackage combination is installed. [x]: %build honors applicable compiler flags or justifies otherwise. [x]: Package contains no bundled libraries without FPC exception. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [x]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: gtk-update-icon-cache is invoked in %postun and %posttrans if package contains icons. Note: icons in coot [x]: Useful -debuginfo package or justification otherwise. [x]: Package is not known to require an ExcludeArch tag. [x]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 10240 bytes in 2 files. [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package does not own files or directories owned by other packages. [x]: All build dependencies are listed in BuildRequires, except for any that are listed in the exceptions section of Packaging Guidelines. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Package contains desktop file if it is a GUI application. [x]: Package installs a %{name}.desktop using desktop-file-install or desktop-file-validate if there is such a file. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [!]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Binary eggs must be removed in %prep ===== SHOULD items ===== Generic: [x]: Uses parallel make %{?_smp_mflags} macro. [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [x]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in coot- data , libcoot , python2-libcoot , coot-doc , coot-debuginfo [x]: Package functions as described. [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [x]: Patches link to upstream bugs/comments/lists or are otherwise justified. [x]: Scriptlets must be sane, if used. [-]: Description and summary sections in the package spec file contains translations for supported Non-English languages, if available. [x]: Package should compile and build into binary rpms on all supported architectures. [-]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on debuginfo package(s). Note: No rpmlint messages. [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Large data in /usr/share should live in a noarch subpackage if package is arched. [x]: Package should not use obsolete m4 macros [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Checking: coot-0.8.7-2.fc26.x86_64.rpm coot-data-0.8.7-2.fc26.noarch.rpm libcoot-0.8.7-2.fc26.x86_64.rpm libcoot-devel-0.8.7-2.fc26.x86_64.rpm python2-libcoot-0.8.7-2.fc26.x86_64.rpm python2-libcoot-devel-0.8.7-2.fc26.x86_64.rpm coot-doc-0.8.7-2.fc26.noarch.rpm coot-debuginfo-0.8.7-2.fc26.x86_64.rpm coot-0.8.7-2.fc26.src.rpm coot.x86_64: W: spelling-error %description -l en_US mmdb -> mm db, mm-db, DBMS coot.x86_64: W: no-manual-page-for-binary pyrogen coot-data.noarch: W: spelling-error %description -l en_US rotamer -> roamer, Rotterdam, Tamera coot-data.noarch: W: no-documentation libcoot.x86_64: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular libcoot-devel.x86_64: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular libcoot-devel.x86_64: W: only-non-binary-in-usr-lib libcoot-devel.x86_64: W: no-documentation python2-libcoot.x86_64: W: no-documentation python2-libcoot-devel.x86_64: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular python2-libcoot-devel.x86_64: W: only-non-binary-in-usr-lib python2-libcoot-devel.x86_64: W: no-documentation python2-libcoot-devel.x86_64: W: dangling-relative-symlink /usr/lib64/python2.7/site-packages/pyrogen_boost.so pyrogen_boost.so.0.0.0 python2-libcoot-devel.x86_64: W: dangling-relative-symlink /usr/lib64/python2.7/site-packages/_pyrogen_swig.so _pyrogen_swig.so.0.0.0 coot-doc.noarch: W: summary-not-capitalized C documentation PDF files for coot coot-doc.noarch: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular coot.src: W: spelling-error %description -l en_US mmdb -> mm db, mm-db, DBMS coot.src: W: strange-permission coot.in 755 9 packages and 0 specfiles checked; 0 errors, 18 warnings. Rpmlint (debuginfo) ------------------- Checking: coot-debuginfo-0.8.7-2.fc26.x86_64.rpm 1 packages and 0 specfiles checked; 0 errors, 0 warnings. Rpmlint (installed packages) ---------------------------- sh: /usr/bin/python: No such file or directory coot.x86_64: W: spelling-error %description -l en_US mmdb -> mm db, mm-db, DBMS coot.x86_64: W: no-manual-page-for-binary pyrogen coot-doc.noarch: W: summary-not-capitalized C documentation PDF files for coot coot-doc.noarch: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular coot-data.noarch: W: spelling-error %description -l en_US rotamer -> roamer, Rotterdam, Tamera coot-data.noarch: W: no-documentation python2-libcoot.x86_64: W: no-documentation libcoot.x86_64: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular libcoot.x86_64: W: unused-direct-shlib-dependency /usr/lib64/libcoot-coord-utils.so.0.0.0 /lib64/libgslcblas.so.0 libcoot-devel.x86_64: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular libcoot-devel.x86_64: W: only-non-binary-in-usr-lib libcoot-devel.x86_64: W: no-documentation python2-libcoot-devel.x86_64: W: spelling-error %description -l en_US macromolecular -> macro molecular, macro-molecular, molecular python2-libcoot-devel.x86_64: W: only-non-binary-in-usr-lib python2-libcoot-devel.x86_64: W: no-documentation python2-libcoot-devel.x86_64: W: dangling-relative-symlink /usr/lib64/python2.7/site-packages/_pyrogen_swig.so _pyrogen_swig.so.0.0.0 python2-libcoot-devel.x86_64: W: dangling-relative-symlink /usr/lib64/python2.7/site-packages/pyrogen_boost.so pyrogen_boost.so.0.0.0 8 packages and 0 specfiles checked; 0 errors, 17 warnings. Requires -------- coot (rpmlib, GLIBC filtered): /bin/sh compat-guile18 coot-data hicolor-icon-theme libAlignment.so.1()(64bit) libDataStructs.so.1()(64bit) libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libDistGeomHelpers.so.1()(64bit) libDistGeometry.so.1()(64bit) libEigenSolvers.so.1()(64bit) libFileParsers.so.1()(64bit) libForceField.so.1()(64bit) libForceFieldHelpers.so.1()(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libGraphMol.so.1()(64bit) libICE.so.6()(64bit) libMolChemicalFeatures.so.1()(64bit) libMolDraw2D.so.1()(64bit) libOptimizer.so.1()(64bit) libRDGeneral.so.1()(64bit) libRDGeometryLib.so.1()(64bit) libSM.so.6()(64bit) libSmilesParse.so.1()(64bit) libSubstructMatch.so.1()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libart_lgpl_2.so.2()(64bit) libatk-1.0.so.0()(64bit) libboost_python.so.1.60.0()(64bit) libc.so.6()(64bit) libcairo.so.2()(64bit) libccp4c.so.0()(64bit) libccp4mg-utils.so.0()(64bit) libclipper-ccp4.so.2()(64bit) libclipper-cif.so.2()(64bit) libclipper-cns.so.2()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-fortran.so.2()(64bit) libclipper-minimol.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libclipper-phs.so.2()(64bit) libcoot(x86-64) libcoot-AngleInfo.so.0()(64bit) libcoot-analysis.so.0()(64bit) libcoot-cabuild.so.0()(64bit) libcoot-compat.so.0()(64bit) libcoot-coord-extras.so.0()(64bit) libcoot-coord-utils.so.0()(64bit) libcoot-coords.so.0()(64bit) libcoot-db-main.so.0()(64bit) libcoot-electrostatics.so.0()(64bit) libcoot-geometry.so.0()(64bit) libcoot-goograph.so.0()(64bit) libcoot-gtkgraph.so.0()(64bit) libcoot-high-res.so.0()(64bit) libcoot-ideal.so.0()(64bit) libcoot-isosurface.so.0()(64bit) libcoot-lidia-core.so.0()(64bit) libcoot-lidia.so.0()(64bit) libcoot-ligand.so.0()(64bit) libcoot-map-heavy.so.0()(64bit) libcoot-map-utils.so.0()(64bit) libcoot-mini-mol.so.0()(64bit) libcoot-protein-db.so.0()(64bit) libcoot-shelx.so.0()(64bit) libcoot-skeleton.so.0()(64bit) libcoot-surface.so.0()(64bit) libcoot-utils.so.0()(64bit) libcootaneer.so.0()(64bit) libcootilus.so.0()(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libfontconfig.so.1()(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgdk-x11-2.0.so.0()(64bit) libgdk_pixbuf-2.0.so.0()(64bit) libgdkglext-x11-1.0.so.0()(64bit) libgio-2.0.so.0()(64bit) libglib-2.0.so.0()(64bit) libglut.so.3()(64bit) libgmodule-2.0.so.0()(64bit) libgnomecanvas-2.so.0()(64bit) libgobject-2.0.so.0()(64bit) libgoocanvas.so.3()(64bit) libgsl.so.19()(64bit) libgslcblas.so.0()(64bit) libgtk-x11-2.0.so.0()(64bit) libgtkglext-x11-1.0.so.0()(64bit) libguile.so.17()(64bit) libm.so.6()(64bit) libmmdb2.so.0()(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpangoft2-1.0.so.0()(64bit) libpangox-1.0.so.0()(64bit) libpng16.so.16()(64bit) libpthread.so.0()(64bit) libpython2.7.so.1.0()(64bit) libsfftw.so.2()(64bit) libsrfftw.so.2()(64bit) libssm.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libutil.so.1()(64bit) python2-libcoot(x86-64) refmac-dictionary rtld(GNU_HASH) coot-doc (rpmlib, GLIBC filtered): coot-data (rpmlib, GLIBC filtered): python2-libcoot (rpmlib, GLIBC filtered): libDepictor.so.1()(64bit) libGraphMol.so.1()(64bit) libRDGeneral.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubstructMatch.so.1()(64bit) libboost_python.so.1.60.0()(64bit) libc.so.6()(64bit) libcoot-analysis.so.0()(64bit) libcoot-coord-utils.so.0()(64bit) libcoot-geometry.so.0()(64bit) libcoot-ideal.so.0()(64bit) libcoot-lidia-core.so.0()(64bit) libcoot-utils.so.0()(64bit) libcoot_py_restraints.so.0()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libmmdb2.so.0()(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) python(abi) rtld(GNU_HASH) libcoot (rpmlib, GLIBC filtered): /sbin/ldconfig libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libFileParsers.so.1()(64bit) libForceField.so.1()(64bit) libForceFieldHelpers.so.1()(64bit) libGL.so.1()(64bit) libGraphMol.so.1()(64bit) libMolChemicalFeatures.so.1()(64bit) libRDGeneral.so.1()(64bit) libRDGeometryLib.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubstructMatch.so.1()(64bit) libboost_python.so.1.60.0()(64bit) libc.so.6()(64bit) libcairo.so.2()(64bit) libccp4mg-utils.so.0()(64bit) libclipper-ccp4.so.2()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-minimol.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libcoot-AngleInfo.so.0()(64bit) libcoot-analysis.so.0()(64bit) libcoot-coord-extras.so.0()(64bit) libcoot-coord-utils.so.0()(64bit) libcoot-coords.so.0()(64bit) libcoot-db-main.so.0()(64bit) libcoot-electrostatics.so.0()(64bit) libcoot-geometry.so.0()(64bit) libcoot-ideal.so.0()(64bit) libcoot-lidia-core.so.0()(64bit) libcoot-ligand.so.0()(64bit) libcoot-map-heavy.so.0()(64bit) libcoot-map-utils.so.0()(64bit) libcoot-mini-mol.so.0()(64bit) libcoot-shelx.so.0()(64bit) libcoot-utils.so.0()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgdk-x11-2.0.so.0()(64bit) libglib-2.0.so.0()(64bit) libgobject-2.0.so.0()(64bit) libgoocanvas.so.3()(64bit) libgsl.so.19()(64bit) libgslcblas.so.0()(64bit) libgtk-x11-2.0.so.0()(64bit) libm.so.6()(64bit) libmmdb2.so.0()(64bit) libpango-1.0.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpython2.7.so.1.0()(64bit) libsrfftw.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) rtld(GNU_HASH) libcoot-devel (rpmlib, GLIBC filtered): libccp4mg-utils.so.0()(64bit) libcoot(x86-64) libcoot-AngleInfo.so.0()(64bit) libcoot-analysis.so.0()(64bit) libcoot-cabuild.so.0()(64bit) libcoot-compat.so.0()(64bit) libcoot-coord-extras.so.0()(64bit) libcoot-coord-utils.so.0()(64bit) libcoot-coords.so.0()(64bit) libcoot-db-main.so.0()(64bit) libcoot-electrostatics.so.0()(64bit) libcoot-geometry.so.0()(64bit) libcoot-goograph.so.0()(64bit) libcoot-gtkgraph.so.0()(64bit) libcoot-high-res.so.0()(64bit) libcoot-ideal.so.0()(64bit) libcoot-isosurface.so.0()(64bit) libcoot-lidia-core.so.0()(64bit) libcoot-lidia.so.0()(64bit) libcoot-ligand.so.0()(64bit) libcoot-map-heavy.so.0()(64bit) libcoot-map-utils.so.0()(64bit) libcoot-mini-mol.so.0()(64bit) libcoot-protein-db.so.0()(64bit) libcoot-shelx.so.0()(64bit) libcoot-skeleton.so.0()(64bit) libcoot-surface.so.0()(64bit) libcoot-tw.so.0()(64bit) libcoot-utils.so.0()(64bit) libcoot_py_restraints.so.0()(64bit) libcootaneer.so.0()(64bit) libcootilus.so.0()(64bit) coot-debuginfo (rpmlib, GLIBC filtered): python2-libcoot-devel (rpmlib, GLIBC filtered): python(abi) python2-libcoot(x86-64) Provides -------- coot: appdata() appdata(coot.appdata.xml) application() application(coot.desktop) coot coot(x86-64) coot-doc: coot-doc coot-data: coot-data python2-libcoot: python2-libcoot python2-libcoot(x86-64) libcoot: libccp4mg-utils.so.0()(64bit) libcoot libcoot(x86-64) libcoot-AngleInfo.so.0()(64bit) libcoot-analysis.so.0()(64bit) libcoot-cabuild.so.0()(64bit) libcoot-compat.so.0()(64bit) libcoot-coord-extras.so.0()(64bit) libcoot-coord-utils.so.0()(64bit) libcoot-coords.so.0()(64bit) libcoot-db-main.so.0()(64bit) libcoot-electrostatics.so.0()(64bit) libcoot-geometry.so.0()(64bit) libcoot-goograph.so.0()(64bit) libcoot-gtkgraph.so.0()(64bit) libcoot-high-res.so.0()(64bit) libcoot-ideal.so.0()(64bit) libcoot-isosurface.so.0()(64bit) libcoot-lidia-core.so.0()(64bit) libcoot-lidia.so.0()(64bit) libcoot-ligand.so.0()(64bit) libcoot-map-heavy.so.0()(64bit) libcoot-map-utils.so.0()(64bit) libcoot-mini-mol.so.0()(64bit) libcoot-protein-db.so.0()(64bit) libcoot-shelx.so.0()(64bit) libcoot-skeleton.so.0()(64bit) libcoot-surface.so.0()(64bit) libcoot-tw.so.0()(64bit) libcoot-utils.so.0()(64bit) libcoot_py_restraints.so.0()(64bit) libcootaneer.so.0()(64bit) libcootilus.so.0()(64bit) libcoot-devel: libcoot-devel libcoot-devel(x86-64) coot-debuginfo: coot-debuginfo coot-debuginfo(x86-64) python2-libcoot-devel: python2-libcoot-devel python2-libcoot-devel(x86-64) Source checksums ---------------- http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/coot-0.8.7.tar.gz : CHECKSUM(SHA256) this package : 2ec33d2b13865cb0524167b6e36f5d9e0f9a9cf90cd61d8e0bb52e1bbf834a59 CHECKSUM(SHA256) upstream package : 2ec33d2b13865cb0524167b6e36f5d9e0f9a9cf90cd61d8e0bb52e1bbf834a59 http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/reference-structures.tar.gz : CHECKSUM(SHA256) this package : 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a CHECKSUM(SHA256) upstream package : 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a 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