[Bug 1403030] Review Request: hdfview - Java HDF5 Object viewer

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https://bugzilla.redhat.com/show_bug.cgi?id=1403030



--- Comment #10 from Zbigniew Jędrzejewski-Szmek <zbyszek@xxxxxxxxx> ---
(In reply to Jos de Kloe from comment #9)
> Here is a first attempt to review your package.
> Main issue is that I get an error when I try to load a file in hdfview.
> Also, the complaints about directory ownership should be adressed I think.
> Finally, it would be nice if you could remove some of the rpmlint errors,
> which seem mostly caused by empty txt files. Do they really need to be empty?

Thank you for the review!

> =======
> Manually added issue:
> - hdfview gives an " Unsupported fileformat" error when I try to
>   open an example file from the samples directory
Hm, any specific file, or all of them? They all work for me, so maybe it's a
question of dependencies? I now see that the binary packages have no version
dependency on jhdf5. I'll add that.

> Issues generated by fedora-review
> - Javadocs are placed in %{_javadocdir}/%{name} (no -%{version} symlink)
>   Note: No javadoc subpackage present
>   See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
> - Javadoc documentation files are generated and included in -javadoc
>   subpackage
>   Note: No javadoc subpackage present. Note: Javadocs are optional for
>   Fedora versions >= 21
>   See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
Right. There's no javadoc. It's optional and I didn't think it'd be
particularly useful, but I'll generate it and check again.

Update: javadocs look useful. I added a javadoc subpackage.

> - Bundled jar/class files should be removed before build
>   Note: Jar files in source (see attachment)
>   See: http://fedoraproject.org/wiki/Packaging:Java#Pre-
>   built_JAR_files_.2F_Other_bundled_software'
This is already fixed in the new srpm.

> ===== MUST items =====
> 
> Generic:
> [x]: Package is licensed with an open-source compatible license and meets
>      other legal requirements as defined in the legal section of Packaging
>      Guidelines.
> [x]: License field in the package spec file matches the actual license.
>      present in BUILD/hdfview-2.13.0-Source/COPYING
> [x]: License file installed when any subpackage combination is installed.
> [!]: Package must own all directories that it creates.
>      Note: Directories without known owners: /usr/share/mime,
>      /usr/share/icons/hicolor, /usr/share/mime/packages
> ==>actually I don't really know how this should be solved,
>    the packaging guidelines are clear enough: the directories you
>    create must be owned by this package, or by one of its dependencies
>    in the "natural dependency chain" or by the filesystem, man, or
>    other explicitly created -filesystem packages.
>    Is this the case for these directories?
>    If so, please add some comment to detail this.
> [!]: Package does not own files or directories owned by other packages.
>      Note: Dirs in package are owned also by:
>      /usr/share/icons/hicolor/16x16/mimetypes(hicolor-icon-theme,
>      keepassx), /usr/share/icons/hicolor/22x22(hicolor-icon-theme, fedora-
>      logos, keepassx), /usr/share/icons/hicolor/22x22/apps(hicolor-icon-
>      theme, fedora-logos), /usr/share/icons/hicolor/32x32/apps(qmmp,
>      hicolor-icon-theme, fedora-logos, keepassx),
>      /usr/share/icons/hicolor/16x16/apps(qmmp, hicolor-icon-theme, fedora-
>      logos, keepassx), /usr/share/icons/hicolor/48x48/mimetypes(hicolor-
>      icon-theme), /usr/share/icons/hicolor/16x16(qmmp, hicolor-icon-theme,
>      fedora-logos, keepassx), /usr/share/icons/hicolor/48x48(qmmp, hicolor-
>      icon-theme, fedora-logos, keepassx, nedit),
>      /usr/share/icons/hicolor/48x48/apps(qmmp, hicolor-icon-theme, fedora-
>      logos, keepassx, nedit), /usr/share/icons/hicolor/22x22/mimetypes
>      (hicolor-icon-theme, keepassx), /usr/share/icons/hicolor/32x32(qmmp,
>      hicolor-icon-theme, fedora-logos, keepassx),
>      /usr/share/icons/hicolor/32x32/mimetypes(hicolor-icon-theme, keepassx)

Fixed. I added R:hicolor-icon-theme.

> ==>same comment as above
> [x]: Package contains no bundled libraries without FPC exception.
> [x]: Changelog in prescribed format.
> [x]: Sources contain only permissible code or content.
> [-]: Development files must be in a -devel package
> [x]: Package uses nothing in %doc for runtime.
> [x]: Package consistently uses macros (instead of hard-coded directory
>      names).
> [x]: Package is named according to the Package Naming Guidelines.
> [x]: Package does not generate any conflict.
> [x]: Package obeys FHS, except libexecdir and /usr/target.
> [-]: If the package is a rename of another package, proper Obsoletes and
>      Provides are present.
> [x]: Requires correct, justified where necessary.
> [x]: Spec file is legible and written in American English.
> [-]: Package contains systemd file(s) if in need.
> [x]: update-desktop-database is invoked in %post and %postun if package
>      contains desktop file(s) with a MimeType: entry.
>      Note: desktop file(s) with MimeType entry in hdfview
> [x]: gtk-update-icon-cache is invoked in %postun and %posttrans if package
>      contains icons.
>      Note: icons in hdfview
> [x]: Package is not known to require an ExcludeArch tag.
> [x]: Large documentation must go in a -doc subpackage. Large could be size
>      (~1MB) or number of files.
>      Note: Documentation size is 20480 bytes in 2 files.
> [x]: Package complies to the Packaging Guidelines
> [x]: Package successfully compiles and builds into binary rpms on at least
>      one supported primary architecture.
> [x]: Package installs properly.
> [x]: Rpmlint is run on all rpms the build produces.
>      Note: There are rpmlint messages (see attachment).
> [x]: If (and only if) the source package includes the text of the
>      license(s) in its own file, then that file, containing the text of the
>      license(s) for the package is included in %license.
> [x]: Package requires other packages for directories it uses.
> [x]: All build dependencies are listed in BuildRequires, except for any
>      that are listed in the exceptions section of Packaging Guidelines.
> [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
> [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
>      beginning of %install.
> [x]: Macros in Summary, %description expandable at SRPM build time.
> [x]: Package contains desktop file if it is a GUI application.
> [x]: Package installs a %{name}.desktop using desktop-file-install or
>      desktop-file-validate if there is such a file.
> [x]: Dist tag is present.
> [x]: Package does not contain duplicates in %files.
> [x]: Permissions on files are set properly.
> [x]: Package use %makeinstall only when make install DESTDIR=... doesn't
>      work.
> [x]: Package is named using only allowed ASCII characters.
> [x]: Package does not use a name that already exists.
> [x]: Package is not relocatable.
> [x]: Sources used to build the package match the upstream source, as
>      provided in the spec URL.
> [x]: Spec file name must match the spec package %{name}, in the format
>      %{name}.spec.
> [x]: File names are valid UTF-8.
> [x]: Packages must not store files under /srv, /opt or /usr/local
> 
> Java:
> [x]: Packages have proper BuildRequires/Requires on jpackage-utils
>      Note: Maven packages do not need to (Build)Require jpackage-utils. It
>      is pulled in by maven-local
> 
> Maven:
> [-]: If package contains pom.xml files install it (including metadata) even
>      when building with ant
> [x]: Maven packages should use new style packaging
> [x]: Old add_to_maven_depmap macro is not being used
> 
> ===== SHOULD items =====
> 
> Generic:
> [x]: update-mime-database is invoked in %post and %postun if package stores
>      mime configuration in /usr/share/mime/packages.
>      Note: mimeinfo files in: hdfview
>      See:
>      http://fedoraproject.org/wiki/Packaging:ScriptletSnippets#mimeinfo
> [-]: If the source package does not include license text(s) as a separate
>      file from upstream, the packager SHOULD query upstream to include it.
> [x]: Final provides and requires are sane (see attachments).
> [-]: Fully versioned dependency in subpackages if applicable.
>      Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in jhdfobj
>      , hdfview-doc
> [!]: Package functions as described.
> ==>when I try to run the hdfview tool it does not seem to work properly.
>    from a mock shell I can run hdfview
>    and the gui launches perfectly (with all its buttons!) and seems
> responsive.
>    However, when I try to open a file I get the error:
>    java.io.IOException: Unsupported fileformat - hdf5_test.h5
>    Maybe I overlooked something?

I think this must be because you had old jhdf5. I added a dependency now,
let's see if this helps.

> [x]: Latest version is packaged.
> [x]: Package does not include license text files separate from upstream.
> [!]: Patches link to upstream bugs/comments/lists or are otherwise
>      justified.
There's single patch, and a comment which explains why this patch is suitable
for Fedora, but not for upstream.

> ==>if I read the patch correctly, it is intended to work around the
>    removal of the bundled stuff in lib. A small comment to explain
>    this (and that no upstream change is requested since this is Fedora
>    specific) would be nice.
> [x]: SourceX tarball generation or download is documented.
>      Note: Package contains tarball without URL, check comments
> [-]: Description and summary sections in the package spec file contains
>      translations for supported Non-English languages, if available.
> [-]: Package should compile and build into binary rpms on all supported
>      architectures.
> [x]: %check is present and all tests pass.
> [x]: Packages should try to preserve timestamps of original installed
>      files.
> [x]: Reviewer should test that the package builds in mock.
> [x]: Buildroot is not present
> [x]: Package has no %clean section with rm -rf %{buildroot} (or
>      $RPM_BUILD_ROOT)
> [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
> [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
> [x]: SourceX is a working URL.
> [x]: Spec use %global instead of %define unless justified.
> 
> Java:
> [x]: Package uses upstream build method (ant/maven/etc.)
> [x]: Packages are noarch unless they use JNI
> 
> ===== EXTRA items =====
> 
> Generic:
> [x]: Rpmlint is run on all installed packages.
>      Note: There are rpmlint messages (see attachment).
> [x]: Spec file according to URL is the same as in SRPM.
> 
> 
> Rpmlint
> -------
> Checking: hdfview-2.13.0-1.fc26.noarch.rpm
>           jhdfobj-2.13.0-1.fc26.noarch.rpm
>           hdfview-doc-2.13.0-1.fc26.noarch.rpm
>           hdfview-2.13.0-1.fc26.src.rpm
> hdfview.noarch: W: no-documentation
> hdfview.noarch: W: no-manual-page-for-binary hdfview
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_CreateGroupAbsoluteRelative.txt
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_CreateFile.txt
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_CreateGroupDataset.txt
> hdfview-doc.noarch: W: file-not-utf8
> /usr/share/doc/hdfview-doc/samples/tst0001.fits
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.groups.
> H5ObjectEx_G_Create.txt
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_CreateAttribute.txt
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_CreateGroup.txt
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_ReadWrite.txt
> hdfview-doc.noarch: E: zero-length
> /usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.
> H5Object_CreateDataset.txt
I removed the whole testfiles/ directory from the binary package.
It doesn't seem useful.

> hdfview.src: W: strange-permission getsources.sh 775
> hdfview.src: W: strange-permission hdfview 775
That's a known rpmlint bug: I have umask 002 here, and that's a perfectly fine
value.
rpmlint shouldn't warn about that.

> hdfview.src:8: W: macro-in-comment %{version}
It's a bit of a hack, but I need to because it is used to generate
the download url: 'rpmspec -p ... | grep ^#Source0' in getsources.sh.

Spec URL: http://in.waw.pl/~zbyszek/fedora/hdfview/hdfview.spec
SRPM URL:
http://in.waw.pl/~zbyszek/fedora/hdfview/hdfview-2.13.0-1.fc25.src.rpm
(note changed url)

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