[Bug 1403030] Review Request: hdfview - Java HDF5 Object viewer

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https://bugzilla.redhat.com/show_bug.cgi?id=1403030



--- Comment #9 from Jos de Kloe <josdekloe@xxxxxxxxx> ---
Here is a first attempt to review your package.
Main issue is that I get an error when I try to load a file in hdfview.
Also, the complaints about directory ownership should be adressed I think.
Finally, it would be nice if you could remove some of the rpmlint errors, which
seem mostly caused by empty txt files. Do they really need to be empty?

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
Manually added issue:
- hdfview gives an " Unsupported fileformat" error when I try to
  open an example file from the samples directory

Issues generated by fedora-review
- Javadocs are placed in %{_javadocdir}/%{name} (no -%{version} symlink)
  Note: No javadoc subpackage present
  See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
- Javadoc documentation files are generated and included in -javadoc
  subpackage
  Note: No javadoc subpackage present. Note: Javadocs are optional for
  Fedora versions >= 21
  See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
- Bundled jar/class files should be removed before build
  Note: Jar files in source (see attachment)
  See: http://fedoraproject.org/wiki/Packaging:Java#Pre-
  built_JAR_files_.2F_Other_bundled_software'


===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     present in BUILD/hdfview-2.13.0-Source/COPYING
[x]: License file installed when any subpackage combination is installed.
[!]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/share/mime,
     /usr/share/icons/hicolor, /usr/share/mime/packages
==>actually I don't really know how this should be solved,
   the packaging guidelines are clear enough: the directories you
   create must be owned by this package, or by one of its dependencies
   in the "natural dependency chain" or by the filesystem, man, or
   other explicitly created -filesystem packages.
   Is this the case for these directories?
   If so, please add some comment to detail this.
[!]: Package does not own files or directories owned by other packages.
     Note: Dirs in package are owned also by:
     /usr/share/icons/hicolor/16x16/mimetypes(hicolor-icon-theme,
     keepassx), /usr/share/icons/hicolor/22x22(hicolor-icon-theme, fedora-
     logos, keepassx), /usr/share/icons/hicolor/22x22/apps(hicolor-icon-
     theme, fedora-logos), /usr/share/icons/hicolor/32x32/apps(qmmp,
     hicolor-icon-theme, fedora-logos, keepassx),
     /usr/share/icons/hicolor/16x16/apps(qmmp, hicolor-icon-theme, fedora-
     logos, keepassx), /usr/share/icons/hicolor/48x48/mimetypes(hicolor-
     icon-theme), /usr/share/icons/hicolor/16x16(qmmp, hicolor-icon-theme,
     fedora-logos, keepassx), /usr/share/icons/hicolor/48x48(qmmp, hicolor-
     icon-theme, fedora-logos, keepassx, nedit),
     /usr/share/icons/hicolor/48x48/apps(qmmp, hicolor-icon-theme, fedora-
     logos, keepassx, nedit), /usr/share/icons/hicolor/22x22/mimetypes
     (hicolor-icon-theme, keepassx), /usr/share/icons/hicolor/32x32(qmmp,
     hicolor-icon-theme, fedora-logos, keepassx),
     /usr/share/icons/hicolor/32x32/mimetypes(hicolor-icon-theme, keepassx)
==>same comment as above
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: update-desktop-database is invoked in %post and %postun if package
     contains desktop file(s) with a MimeType: entry.
     Note: desktop file(s) with MimeType entry in hdfview
[x]: gtk-update-icon-cache is invoked in %postun and %posttrans if package
     contains icons.
     Note: icons in hdfview
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 20480 bytes in 2 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: All build dependencies are listed in BuildRequires, except for any
     that are listed in the exceptions section of Packaging Guidelines.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package contains desktop file if it is a GUI application.
[x]: Package installs a %{name}.desktop using desktop-file-install or
     desktop-file-validate if there is such a file.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Java:
[x]: Packages have proper BuildRequires/Requires on jpackage-utils
     Note: Maven packages do not need to (Build)Require jpackage-utils. It
     is pulled in by maven-local

Maven:
[-]: If package contains pom.xml files install it (including metadata) even
     when building with ant
[x]: Maven packages should use new style packaging
[x]: Old add_to_maven_depmap macro is not being used

===== SHOULD items =====

Generic:
[x]: update-mime-database is invoked in %post and %postun if package stores
     mime configuration in /usr/share/mime/packages.
     Note: mimeinfo files in: hdfview
     See:
     http://fedoraproject.org/wiki/Packaging:ScriptletSnippets#mimeinfo
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[-]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in jhdfobj
     , hdfview-doc
[!]: Package functions as described.
==>when I try to run the hdfview tool it does not seem to work properly.
   from a mock shell I can run hdfview
   and the gui launches perfectly (with all its buttons!) and seems responsive.
   However, when I try to open a file I get the error:
   java.io.IOException: Unsupported fileformat - hdf5_test.h5
   Maybe I overlooked something?

[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[!]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
==>if I read the patch correctly, it is intended to work around the
   removal of the bundled stuff in lib. A small comment to explain
   this (and that no upstream change is requested since this is Fedora
   specific) would be nice.
[x]: SourceX tarball generation or download is documented.
     Note: Package contains tarball without URL, check comments
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[-]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

Java:
[x]: Package uses upstream build method (ant/maven/etc.)
[x]: Packages are noarch unless they use JNI

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: hdfview-2.13.0-1.fc26.noarch.rpm
          jhdfobj-2.13.0-1.fc26.noarch.rpm
          hdfview-doc-2.13.0-1.fc26.noarch.rpm
          hdfview-2.13.0-1.fc26.src.rpm
hdfview.noarch: W: no-documentation
hdfview.noarch: W: no-manual-page-for-binary hdfview
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateGroupAbsoluteRelative.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateFile.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateGroupDataset.txt
hdfview-doc.noarch: W: file-not-utf8
/usr/share/doc/hdfview-doc/samples/tst0001.fits
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.groups.H5ObjectEx_G_Create.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateAttribute.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateGroup.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_ReadWrite.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateDataset.txt
hdfview.src: W: strange-permission getsources.sh 775
hdfview.src: W: strange-permission hdfview 775
hdfview.src:8: W: macro-in-comment %{version}
hdfview.src: W: invalid-url Source0: hdfview-2.13.0-nolibs.tar.xz
4 packages and 0 specfiles checked; 8 errors, 7 warnings.




Rpmlint (installed packages)
----------------------------
hdfview.noarch: W: no-documentation
hdfview.noarch: W: no-manual-page-for-binary hdfview
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.groups.H5ObjectEx_G_Create.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateDataset.txt
hdfview-doc.noarch: W: file-not-utf8
/usr/share/doc/hdfview-doc/samples/tst0001.fits
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateAttribute.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateGroupAbsoluteRelative.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateGroup.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateGroupDataset.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_CreateFile.txt
hdfview-doc.noarch: E: zero-length
/usr/share/doc/hdfview-doc/examples/testfiles/examples.intro.H5Object_ReadWrite.txt
3 packages and 0 specfiles checked; 8 errors, 3 warnings.



Requires
--------
hdfview (rpmlib, GLIBC filtered):
    /bin/sh
    desktop-file-utils
    java
    java-headless
    javapackages-tools
    jhdfobj
    mvn(edu.ucar:cdm)
    mvn(gov.nasa.gsfc.heasarc:nom-tam-fits)
    mvn(org.hdfgroup:jhdf)
    mvn(org.hdfgroup:jhdf5)
    mvn(org.slf4j:slf4j-api)
    mvn(org.slf4j:slf4j-simple)

hdfview-doc (rpmlib, GLIBC filtered):

jhdfobj (rpmlib, GLIBC filtered):
    java-headless
    javapackages-tools
    mvn(org.hdfgroup:jhdf)
    mvn(org.hdfgroup:jhdf5)
    mvn(org.slf4j:slf4j-api)



Provides
--------
hdfview:
    appdata()
    appdata(hdfview.appdata.xml)
    application()
    application(hdfview.desktop)
    hdfview
    mimehandler(application/x-hdf)
    mimehandler(application/x-hdf5)
    mvn(org.hdfgroup:jhdfview)

hdfview-doc:
    hdfview-doc

jhdfobj:
    jhdfobj
    mvn(org.hdfgroup:jhdfobj)



Jar and class files in source
-----------------------------
./hdfview-2.13.0-Source/lib/jhdf5.jar
./hdfview-2.13.0-Source/lib/slf4j-slf4j-nop.jar
./hdfview-2.13.0-Source/lib/jhdf.jar
./hdfview-2.13.0-Source/lib/slf4j-api.jar
./hdfview-2.13.0-Source/lib/slf4j-jcl-over-slf4j.jar
./hdfview-2.13.0-Source/lib/slf4j-simple.jar
./hdfview-2.13.0-Source/lib/junit.jar
./hdfview-2.13.0-Source/lib/thredds_cdm.jar
./hdfview-2.13.0-Source/lib/slf4j-slf4j-simple.jar
./hdfview-2.13.0-Source/lib/slf4j-nop.jar
./hdfview-2.13.0-Source/lib/nom-tam-fits.jar
./hdfview-2.13.0-Source/lib/slf4j-slf4j-api.jar

JdK: manually checked that these jar libs are removed from the srpm,
     so this is no issue.

Generated by fedora-review 0.6.1 (f03e4e7) last change: 2016-05-02
Command line :/usr/bin/fedora-review -o  -n -n hdfview
Buildroot used: fedora-rawhide-x86_64
Active plugins: Generic, Shell-api, Java
Disabled plugins: C/C++, Python, fonts, SugarActivity, Ocaml, Perl, Haskell, R,
PHP
Disabled flags: EXARCH, DISTTAG, EPEL5, BATCH, EPEL6

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