[Bug 1173159] Review Request: libsbml - Systems Biology Markup Language library

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https://bugzilla.redhat.com/show_bug.cgi?id=1173159



--- Comment #23 from Michel Alexandre Salim <michel@xxxxxxxxxxxxxxx> ---
Hi both,

There are some file ownership issues (see below), and when I build on my local
mock instance, somehow the Ruby subpackage includes all the documentation files
that are also in -docs:

$ ls -lhrS *.rpm | tail -n3                              17:46  michel@fedora21
-rw-rw-r--. 1 michel mock  26M Peb  3 14:12
libsbml-docs-5.11.0-6.fc21.noarch.rpm
-rw-rw-r--. 1 michel mock  28M Peb  3 14:11 ruby-SBML-5.11.0-6.fc21.x86_64.rpm
-rw-rw-r--. 1 michel mock  76M Peb  3 14:13
libsbml-debuginfo-5.11.0-6.fc21.x86_64.rpm


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- Packages have proper BuildRequires/Requires on jpackage-utils
- Javadocs are placed in %{_javadocdir}/%{name} (no -%{version} symlink)
  Note: No javadoc subpackage present
  See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
- Javadoc documentation files are generated and included in -javadoc
  subpackage
  Note: No javadoc subpackage present
  See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
- Large documentation must go in a -doc subpackage. Large could be size (~1MB)
  or number of files.
  Note: Documentation size is 574330880 bytes in 12918 files.
  See: http://fedoraproject.org/wiki/Packaging/Guidelines#PackageDocumentation


===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Development (unversioned) .so files in -devel subpackage, if present.
     Note: Unversioned so-files in private %_libdir subdirectory (see
     attachment). Verify they are not in ld path.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig called in %post and %postun if required.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
     Note: Using prebuilt packages
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses found:
     "LGPL", "GPL (v3 or later)", "Unknown or generated", "MIT/X11 (BSD
     like)", "*No copyright* LGPL (with incorrect FSF address)", "BSD (3
     clause)", "LGPL (with incorrect FSF address)". 1118 files have unknown
     license. Detailed output of licensecheck in /home/michel/reviews/1173159
     -libsbml-manual/review-libsbml/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
     Note: License text declares in subpackages except for -devel,
            but they point to same file anyway so only one copy is on disk
[x]: Package requires other packages for directories it uses.
     Note: Directories without known owners: /usr/lib/mono, /usr/lib64/libsbml
     - libsbml-sharp needs to Requires: mono-core
[!]: Package must own all directories that it creates.
     Note: No known owner of /usr/lib64/libsbml
     - java-libsbml needs to own %{_libdir}/libsbml
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: All build dependencies are listed in BuildRequires, except for any that
     are listed in the exceptions section of Packaging Guidelines.
     Note: Using prebuilt rpms.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[!]: Package consistently uses macros (instead of hard-coded directory names).
     Use %{_monodir} instead of %{_prefix}/lib/mono
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[!]: Requires correct, justified where necessary.
     see libsbml-sharp note above
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[?]: Package is not known to require an ExcludeArch tag.
     note - it does but is marked as such -- this is fine
[x]: Package complies to the Packaging Guidelines
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the license(s)
     in its own file, then that file, containing the text of the license(s)
     for the package is included in %doc.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install' ' DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package do not use a name that already exist
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Java:
[x]: Bundled jar/class files should be removed before build

Maven:
[-]: If package contains pom.xml files install it (including depmaps) even
     when building with ant
[x]: Old add_to_maven_depmap macro is not being used

Perl:
[x]: Package contains the mandatory BuildRequires and Requires:.

Python:
[x]: Python eggs must not download any dependencies during the build process.
[-]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[-]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[x]: Reviewer should test that the package builds in mock.
[-]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in libsbml-
     docs
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise justified.
[-]: Scriptlets must be sane, if used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[?]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[?]: Packages should try to preserve timestamps of original installed files.
     Not sure if configure_file does this but it's not that important as
     we don't have shared files in multilib installs
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: Dist tag is present (not strictly required in GL).
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Uses parallel make %{?_smp_mflags} macro.
[x]: The placement of pkgconfig(.pc) files are correct.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

Java:
[-]: Packages are noarch unless they use JNI
     Note: libsbml subpackage is not noarch. Please verify manually
     Package does use JNI (to communicate with libsbml) so this is fine
[x]: Package uses upstream build method (ant/maven/etc.)

===== EXTRA items =====

Generic:
[!]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
     Note: Arch-ed rpms have a total of 290048000 bytes in /usr/share ruby-
     SBML-5.11.0-6.fc21.x86_64.rpm:289546240
     See:
    
http://fedoraproject.org/wiki/Packaging:ReviewGuidelines#Package_Review_Guidelines
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: libsbml-5.11.0-6.fc21.x86_64.rpm
          libsbml-devel-5.11.0-6.fc21.x86_64.rpm
          python-libsbml-5.11.0-6.fc21.x86_64.rpm
          python3-libsbml-5.11.0-6.fc21.x86_64.rpm
          perl-LibSBML-5.11.0-6.fc21.x86_64.rpm
          ruby-SBML-5.11.0-6.fc21.x86_64.rpm
          java-libsbml-5.11.0-6.fc21.x86_64.rpm
          octave-SBML-5.11.0-6.fc21.x86_64.rpm
          R-libSBML-5.11.0-6.fc21.x86_64.rpm
          libsbml-sharp-5.11.0-6.fc21.x86_64.rpm
          libsbml-docs-5.11.0-6.fc21.noarch.rpm
          libsbml-5.11.0-6.fc21.src.rpm
libsbml-devel.x86_64: W: only-non-binary-in-usr-lib
libsbml-devel.x86_64: W: no-documentation
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/ListOfCurveElements.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/ColorDefinition.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GraphicalPrimitive1D.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RelAbsVector.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Polygon.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Transformation.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Style.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Text.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GlobalStyle.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderGroup.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Ellipse.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GraphicalPrimitive2D.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GradientBase.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RadialGradient.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GradientStop.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderPoint.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderInformationBase.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderCurve.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Rectangle.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderCubicBezier.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LineEnding.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Image.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LocalStyle.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LinearGradient.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GlobalRenderInformation.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LocalRenderInformation.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Transformation2D.h
python-libsbml.x86_64: W: no-documentation
python3-libsbml.x86_64: W: no-documentation
perl-LibSBML.x86_64: W: no-documentation
ruby-SBML.x86_64: W: spelling-error Summary(en_US) libSBML -> Librium
ruby-SBML.x86_64: W: spelling-error %description -l en_US libSBML -> Librium
ruby-SBML.x86_64: W: dangling-relative-symlink
/usr/share/doc/libsbml/README-ruby.txt src/bindings/ruby/README.txt
java-libsbml.x86_64: W: no-documentation
octave-SBML.x86_64: W: spelling-error Summary(en_US) libSBML -> Librium
octave-SBML.x86_64: W: spelling-error %description -l en_US libSBML -> Librium
octave-SBML.x86_64: W: no-documentation
R-libSBML.x86_64: W: no-documentation
R-libSBML.x86_64: E: zero-length /usr/lib64/R/library/libSBML/help/libSBML.rdb
R-libSBML.x86_64: E: zero-length /usr/lib64/R/library/libSBML/help/AnIndex
libsbml-sharp.x86_64: W: no-documentation
libsbml.src:175: W: unversioned-explicit-provides bundled(jquery)
libsbml.src:344: W: macro-in-comment %{name}
libsbml.src:350: W: macro-in-comment %{name}
libsbml.src:391: E: hardcoded-library-path in %{_prefix}/lib/mono/libsbmlcsP/
12 packages and 0 specfiles checked; 30 errors, 17 warnings.




Rpmlint (installed packages)
----------------------------
Cannot parse rpmlint output:


Requires
--------
python3-libsbml (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libpython3.4m.so.1.0()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    python(abi)
    rtld(GNU_HASH)

perl-LibSBML (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libperl.so.5.18()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    perl(:MODULE_COMPAT_5.18.4)
    perl(DynaLoader)
    perl(Exporter)
    perl(base)
    perl(vars)
    rtld(GNU_HASH)

libsbml-sharp (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

libsbml (rpmlib, GLIBC filtered):
    /sbin/ldconfig
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

ruby-SBML (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libruby.so.2.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)
    ruby(release)

octave-SBML (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    liboctave.so.2()(64bit)
    liboctinterp.so.2()(64bit)
    libsbml(x86-64)
    libsbml.so.5()(64bit)
    libstdc++.so.6()(64bit)
    libxml2.so.2()(64bit)
    libz.so.1()(64bit)
    octave
    octave(api)
    rtld(GNU_HASH)

python-libsbml (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libpython2.7.so.1.0()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    python(abi)
    rtld(GNU_HASH)

java-libsbml (rpmlib, GLIBC filtered):
    java-headless
    jpackage-utils
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

R-libSBML (rpmlib, GLIBC filtered):
    R-core
    libR.so()(64bit)
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

libsbml-docs (rpmlib, GLIBC filtered):
    libsbml

libsbml-devel (rpmlib, GLIBC filtered):
    /usr/bin/pkg-config
    libsbml(x86-64)
    libsbml.so.5()(64bit)
    pkgconfig(libxml-2.0)



Provides
--------
python3-libsbml:
    python3-libsbml
    python3-libsbml(x86-64)

perl-LibSBML:
    perl(LibSBML)
    perl(LibSBML::ASTBase)
    perl(LibSBML::ASTBasePlugin)
    perl(LibSBML::ASTNode)
    perl(LibSBML::ASTNodeList)
    perl(LibSBML::AlgebraicRule)
    perl(LibSBML::AssignmentRule)
    perl(LibSBML::Association)
    perl(LibSBML::BoundingBox)
    perl(LibSBML::CVTerm)
    perl(LibSBML::CVTermList)
    perl(LibSBML::CobraToFbcConverter)
    perl(LibSBML::ColorDefinition)
    perl(LibSBML::CompBase)
    perl(LibSBML::CompExtension)
    perl(LibSBML::CompFlatteningConverter)
    perl(LibSBML::CompModelPlugin)
    perl(LibSBML::CompPkgNamespaces)
    perl(LibSBML::CompSBMLDocumentPlugin)
    perl(LibSBML::CompSBasePlugin)
    perl(LibSBML::Compartment)
    perl(LibSBML::CompartmentGlyph)
    perl(LibSBML::CompartmentType)
    perl(LibSBML::Constraint)
    perl(LibSBML::ConversionOption)
    perl(LibSBML::ConversionProperties)
    perl(LibSBML::CubicBezier)
    perl(LibSBML::Curve)
    perl(LibSBML::Date)
    perl(LibSBML::DateList)
    perl(LibSBML::DefaultTerm)
    perl(LibSBML::Delay)
    perl(LibSBML::Deletion)
    perl(LibSBML::Dimensions)
    perl(LibSBML::ElementFilter)
    perl(LibSBML::Ellipse)
    perl(LibSBML::Event)
    perl(LibSBML::EventAssignment)
    perl(LibSBML::ExternalModelDefinition)
    perl(LibSBML::FbcExtension)
    perl(LibSBML::FbcModelPlugin)
    perl(LibSBML::FbcPkgNamespaces)
    perl(LibSBML::FbcSpeciesPlugin)
    perl(LibSBML::FbcToCobraConverter)
    perl(LibSBML::FluxBound)
    perl(LibSBML::FluxObjective)
    perl(LibSBML::FunctionDefinition)
    perl(LibSBML::FunctionTerm)
    perl(LibSBML::GeneAssociation)
    perl(LibSBML::GeneralGlyph)
    perl(LibSBML::GlobalRenderInformation)
    perl(LibSBML::GlobalStyle)
    perl(LibSBML::GradientBase)
    perl(LibSBML::GradientStop)
    perl(LibSBML::GraphicalObject)
    perl(LibSBML::GraphicalPrimitive1D)
    perl(LibSBML::GraphicalPrimitive2D)
    perl(LibSBML::ISBMLExtensionNamespaces)
    perl(LibSBML::IdList)
    perl(LibSBML::IdentifierTransformer)
    perl(LibSBML::Image)
    perl(LibSBML::InitialAssignment)
    perl(LibSBML::Input)
    perl(LibSBML::KineticLaw)
    perl(LibSBML::L3ParserSettings)
    perl(LibSBML::Layout)
    perl(LibSBML::LayoutExtension)
    perl(LibSBML::LayoutModelPlugin)
    perl(LibSBML::LayoutPkgNamespaces)
    perl(LibSBML::LayoutSpeciesReferencePlugin)
    perl(LibSBML::LineEnding)
    perl(LibSBML::LineSegment)
    perl(LibSBML::LinearGradient)
    perl(LibSBML::ListOf)
    perl(LibSBML::ListOfColorDefinitions)
    perl(LibSBML::ListOfCompartmentGlyphs)
    perl(LibSBML::ListOfCompartmentTypes)
    perl(LibSBML::ListOfCompartments)
    perl(LibSBML::ListOfConstraints)
    perl(LibSBML::ListOfCurveElements)
    perl(LibSBML::ListOfDeletions)
    perl(LibSBML::ListOfDrawables)
    perl(LibSBML::ListOfEventAssignments)
    perl(LibSBML::ListOfEvents)
    perl(LibSBML::ListOfExternalModelDefinitions)
    perl(LibSBML::ListOfFluxBounds)
    perl(LibSBML::ListOfFluxObjectives)
    perl(LibSBML::ListOfFunctionDefinitions)
    perl(LibSBML::ListOfFunctionTerms)
    perl(LibSBML::ListOfGeneAssociations)
    perl(LibSBML::ListOfGlobalRenderInformation)
    perl(LibSBML::ListOfGlobalStyles)
    perl(LibSBML::ListOfGradientDefinitions)
    perl(LibSBML::ListOfGradientStops)
    perl(LibSBML::ListOfGraphicalObjects)
    perl(LibSBML::ListOfInitialAssignments)
    perl(LibSBML::ListOfInputs)
    perl(LibSBML::ListOfLayouts)
    perl(LibSBML::ListOfLineEndings)
    perl(LibSBML::ListOfLineSegments)
    perl(LibSBML::ListOfLocalParameters)
    perl(LibSBML::ListOfLocalRenderInformation)
    perl(LibSBML::ListOfLocalStyles)
    perl(LibSBML::ListOfModelDefinitions)
    perl(LibSBML::ListOfObjectives)
    perl(LibSBML::ListOfOutputs)
    perl(LibSBML::ListOfParameters)
    perl(LibSBML::ListOfPorts)
    perl(LibSBML::ListOfQualitativeSpecies)
    perl(LibSBML::ListOfReactionGlyphs)
    perl(LibSBML::ListOfReactions)
    perl(LibSBML::ListOfReferenceGlyphs)
    perl(LibSBML::ListOfReplacedElements)
    perl(LibSBML::ListOfRules)
    perl(LibSBML::ListOfSpecies)
    perl(LibSBML::ListOfSpeciesGlyphs)
    perl(LibSBML::ListOfSpeciesReferenceGlyphs)
    perl(LibSBML::ListOfSpeciesReferences)
    perl(LibSBML::ListOfSpeciesTypes)
    perl(LibSBML::ListOfSubmodels)
    perl(LibSBML::ListOfTextGlyphs)
    perl(LibSBML::ListOfTransitions)
    perl(LibSBML::ListOfUnitDefinitions)
    perl(LibSBML::ListOfUnits)
    perl(LibSBML::LocalParameter)
    perl(LibSBML::LocalRenderInformation)
    perl(LibSBML::LocalStyle)
    perl(LibSBML::Model)
    perl(LibSBML::ModelCreator)
    perl(LibSBML::ModelCreatorList)
    perl(LibSBML::ModelDefinition)
    perl(LibSBML::ModelHistory)
    perl(LibSBML::ModifierSpeciesReference)
    perl(LibSBML::OFStream)
    perl(LibSBML::OStream)
    perl(LibSBML::OStringStream)
    perl(LibSBML::Objective)
    perl(LibSBML::Output)
    perl(LibSBML::Parameter)
    perl(LibSBML::Point)
    perl(LibSBML::Polygon)
    perl(LibSBML::Port)
    perl(LibSBML::Priority)
    perl(LibSBML::QualExtension)
    perl(LibSBML::QualModelPlugin)
    perl(LibSBML::QualPkgNamespaces)
    perl(LibSBML::QualitativeSpecies)
    perl(LibSBML::RDFAnnotationParser)
    perl(LibSBML::RadialGradient)
    perl(LibSBML::RateRule)
    perl(LibSBML::Reaction)
    perl(LibSBML::ReactionGlyph)
    perl(LibSBML::Rectangle)
    perl(LibSBML::ReferenceGlyph)
    perl(LibSBML::RelAbsVector)
    perl(LibSBML::RenderCubicBezier)
    perl(LibSBML::RenderCurve)
    perl(LibSBML::RenderExtension)
    perl(LibSBML::RenderGraphicalObjectPlugin)
    perl(LibSBML::RenderGroup)
    perl(LibSBML::RenderInformationBase)
    perl(LibSBML::RenderLayoutPlugin)
    perl(LibSBML::RenderListOfLayoutsPlugin)
    perl(LibSBML::RenderPkgNamespaces)
    perl(LibSBML::RenderPoint)
    perl(LibSBML::ReplacedBy)
    perl(LibSBML::ReplacedElement)
    perl(LibSBML::Replacing)
    perl(LibSBML::Rule)
    perl(LibSBML::SBMLConstructorException)
    perl(LibSBML::SBMLConverter)
    perl(LibSBML::SBMLConverterRegistry)
    perl(LibSBML::SBMLDocument)
    perl(LibSBML::SBMLDocumentPlugin)
    perl(LibSBML::SBMLError)
    perl(LibSBML::SBMLErrorLog)
    perl(LibSBML::SBMLExtension)
    perl(LibSBML::SBMLExtensionException)
    perl(LibSBML::SBMLExtensionRegistry)
    perl(LibSBML::SBMLExternalValidator)
    perl(LibSBML::SBMLFileResolver)
    perl(LibSBML::SBMLFunctionDefinitionConverter)
    perl(LibSBML::SBMLIdConverter)
    perl(LibSBML::SBMLInferUnitsConverter)
    perl(LibSBML::SBMLInitialAssignmentConverter)
    perl(LibSBML::SBMLLevelVersionConverter)
    perl(LibSBML::SBMLLocalParameterConverter)
    perl(LibSBML::SBMLNamespaces)
    perl(LibSBML::SBMLNamespacesList)
    perl(LibSBML::SBMLReactionConverter)
    perl(LibSBML::SBMLReader)
    perl(LibSBML::SBMLResolver)
    perl(LibSBML::SBMLResolverRegistry)
    perl(LibSBML::SBMLRuleConverter)
    perl(LibSBML::SBMLStripPackageConverter)
    perl(LibSBML::SBMLTransforms)
    perl(LibSBML::SBMLUnitsConverter)
    perl(LibSBML::SBMLUri)
    perl(LibSBML::SBMLValidator)
    perl(LibSBML::SBMLWriter)
    perl(LibSBML::SBO)
    perl(LibSBML::SBase)
    perl(LibSBML::SBaseExtensionPoint)
    perl(LibSBML::SBaseList)
    perl(LibSBML::SBasePlugin)
    perl(LibSBML::SBaseRef)
    perl(LibSBML::SimpleSpeciesReference)
    perl(LibSBML::Species)
    perl(LibSBML::SpeciesGlyph)
    perl(LibSBML::SpeciesReference)
    perl(LibSBML::SpeciesReferenceGlyph)
    perl(LibSBML::SpeciesType)
    perl(LibSBML::StoichiometryMath)
    perl(LibSBML::StringSet)
    perl(LibSBML::Style)
    perl(LibSBML::Submodel)
    perl(LibSBML::SyntaxChecker)
    perl(LibSBML::Text)
    perl(LibSBML::TextGlyph)
    perl(LibSBML::Transformation)
    perl(LibSBML::Transformation2D)
    perl(LibSBML::Transition)
    perl(LibSBML::Trigger)
    perl(LibSBML::Unit)
    perl(LibSBML::UnitDefinition)
    perl(LibSBML::XMLAttributes)
    perl(LibSBML::XMLConstructorException)
    perl(LibSBML::XMLError)
    perl(LibSBML::XMLErrorLog)
    perl(LibSBML::XMLInputStream)
    perl(LibSBML::XMLNamespaces)
    perl(LibSBML::XMLNode)
    perl(LibSBML::XMLOutputStream)
    perl(LibSBML::XMLOwningOutputFileStream)
    perl(LibSBML::XMLOwningOutputStringStream)
    perl(LibSBML::XMLToken)
    perl(LibSBML::XMLTriple)
    perl(LibSBML::double_array)
    perl(LibSBML::int_array)
    perl(LibSBMLc)
    perl-LibSBML
    perl-LibSBML(x86-64)

libsbml-sharp:
    libsbml-sharp
    libsbml-sharp(x86-64)
    libsbmlcs.so()(64bit)

libsbml:
    libsbml
    libsbml(x86-64)
    libsbml.so.5()(64bit)

ruby-SBML:
    libSBML.so()(64bit)
    ruby(SBML)
    ruby-SBML
    ruby-SBML(x86-64)

octave-SBML:
    octave-SBML
    octave-SBML(x86-64)

python-libsbml:
    python-libsbml
    python-libsbml(x86-64)

java-libsbml:
    java-libsbml
    java-libsbml(x86-64)
    libsbmlj.so()(64bit)

R-libSBML:
    R-libSBML
    R-libSBML(x86-64)
    libSBML.so()(64bit)

libsbml-docs:
    bundled(jquery)
    libsbml-docs

libsbml-devel:
    libsbml-devel
    libsbml-devel(x86-64)
    pkgconfig(libsbml)



Unversioned so-files
--------------------
python-libsbml: /usr/lib64/python2.7/site-packages/libsbml/_libsbml.so
python3-libsbml: /usr/lib64/python3.4/site-packages/libsbml/_libsbml.so
perl-LibSBML: /usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so
ruby-SBML: /usr/lib64/ruby/vendor_ruby/libSBML.so
java-libsbml: /usr/lib64/libsbml/libsbmlj.so
R-libSBML: /usr/lib64/R/library/libSBML/libs/libSBML.so
libsbml-sharp: /usr/lib/mono/libsbmlcsP/libsbmlcs.so

Source checksums
----------------
http://sourceforge.net/projects/sbml/files/libsbml/5.11.0/stable/libSBML-5.11.0-core-plus-packages-src.tar.gz
:
  CHECKSUM(SHA256) this package     :
b21931ca7461494915c617b30d4a9f2cafe831d6ce74989b3e5874e6e3c3f72b
  CHECKSUM(SHA256) upstream package :
b21931ca7461494915c617b30d4a9f2cafe831d6ce74989b3e5874e6e3c3f72b
http://sourceforge.net/projects/sbml/files/libsbml/5.11.0/experimental/source/render-5.11.0-beta-1.zip
:
  CHECKSUM(SHA256) this package     :
5ed5cec563260201b958d790543f5dac8a516a088c4ced52f85cf5fc9e495e69
  CHECKSUM(SHA256) upstream package :
5ed5cec563260201b958d790543f5dac8a516a088c4ced52f85cf5fc9e495e69


Generated by fedora-review 0.5.2 (63c24cb) last change: 2014-07-14
Command line :/usr/bin/fedora-review -n libsbml -p
Buildroot used: fedora-21-x86_64
Active plugins: Java, C/C++, Python, Shell-api, Perl, Generic
Disabled plugins: fonts, SugarActivity, Ocaml, Haskell, R, PHP, Ruby
Disabled flags: EXARCH, EPEL5, BATCH, DISTTAG

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