[Bug 597307] New: Review Request: fastx_toolkit - Tools to process short-reads FASTA/FASTQ files

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Summary: Review Request: fastx_toolkit - Tools to process short-reads FASTA/FASTQ files

https://bugzilla.redhat.com/show_bug.cgi?id=597307

           Summary: Review Request: fastx_toolkit - Tools to process
                    short-reads FASTA/FASTQ files
           Product: Fedora
           Version: rawhide
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: medium
          Priority: medium
         Component: Package Review
        AssignedTo: nobody@xxxxxxxxxxxxxxxxx
        ReportedBy: bloch@xxxxxxxxxxxx
         QAContact: extras-qa@xxxxxxxxxxxxxxxxx
                CC: notting@xxxxxxxxxx, fedora-package-review@xxxxxxxxxx
   Estimated Hours: 0.0
    Classification: Fedora


Spec URL:
http://verdurin.org.uk/~verdurin/fedora/reviews/fastx_toolkit/fastx_toolkit.spec
SRPM URL:
http://verdurin.org.uk/~verdurin/fedora/reviews/fastx_toolkit/fastx_toolkit-0.0.13-1.fc12.src.rpm
Description: 

The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).

The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.

However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

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