Re: Automating R package dependencies

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FYI, I have put together a Change proposal for this work, which you
may have seen announced [1].

On Mon, 17 Jun 2019 at 09:35, José Abílio Matos <jamatos@xxxxxxxx> wrote:
>
> On Sunday, 16 June 2019 03.09.41 WEST Elliott Sales de Andrade wrote:
> > Hi R-interested packagers and others,
> >
> > So now the question is how to apply this. I expect there are social
> > concerns, i.e., discussing with the R maintainer, making a
> > Self-contained Change, etc. But for this email, I am mostly concerned
> > with the technical aspects:
> >
> > 1. Is R-devel the right place to put the script and RPM attribute file
> > (all R packages would normally depend on this)?
>
> Either that or create a new package R-rpm-macros and have R-devel depending on
> it (just like it happens for python).
>

Coupled with Florian's suggestion to place the files in the RPM
ecosystem, I plan to make an R-rpm-macros package for this.

> > 2. Does this namespacing make sense?
>
> What are your doubts here?
>
> 1) use a versioned dependency like R3.6dist(packageName);
> or
> 2) refer to the repository R_cran(packageName)?
>

I'm just looking for any issues that may arise. I don't believe these
latter two would work though. For 1, encoding the minor version seems
unnecessary. While 3.4->3.5 required rebuilding compiled libraries,
3.5->3.6 did not. And non-compiled libraries did not need a rebuild at
all. So adding the minor version would cause extraneous rebuilds when
new R versions come out. For 2, I'm not sure indicating CRAN source
adds any clarity.

> > 3. Are dashes in *namespaced* versions going to be a problem?
>
> I do not think so. I remember in python one case where this happens:
> # rpm -q --provides python3-dateutil
> python3-dateutil = 1:2.8.0-1.fc30
> python3.7dist(python-dateutil) = 2.8.0
> python3dist(python-dateutil) = 2.8.0
>

I was asking about versions, not names.

> > 4. Python had a flag to enable the automatic generator; do we need
> > this for R, and how was it implemented?
> > 5. I expect this would need a rebuild of all packages to get the
> > dependencies right (because the regular rebuild is unordered); would
> > this need a side tag? Or would leaving it for the normal mass rebuild
> > just be fine?
>
> I tend to the last option if we ensure that all R packages are rebuilt.
>

I've discussed with releng and have a simple plan to build without side tag [2].

> > 6. R only has two levels of dependencies (hard-require or suggested,
> > but not installed by default). Thus both build- and runtime-optional
> > packages are in Suggests; do we care about the extra Suggests?
>
> Does dnf cares about Suggests?
>
> According to dnf.conf the option install_weak_deps:
> "When this option is set to True and a new package is about to be installed,
> all packages linked by weak dependency relation (Recommends  or  Supplements
> flags) with this package will pulled into the transaction.  Default is True."
>
> It does not refers Suggests...
>

Not directly at this time. It is simply an unused hint. It is possible
for dnf to print them out for the user to further decide, but nothing
is implemented right now.

> --
> José Abílio
>

[1] https://fedoraproject.org/wiki/Changes/Automatic_R_runtime_dependencies
[2] https://pagure.io/releng/issue/8501

-- 
Elliott
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