Recurring issue: PG is inconsistent, but lists no inconsistent objects

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Hello,

I am running into an "interesting" issue with a PG that is being flagged
as inconsistent during scrub (causing the cluster to go to HEALTH_ERR),
but doesn't actually appear to contain any inconsistent objects.

$ ceph health detail
HEALTH_ERR 1 scrub errors; Possible data damage: 1 pg inconsistent
OSD_SCRUB_ERRORS 1 scrub errors
PG_DAMAGED Possible data damage: 1 pg inconsistent
    pg 10.10d is active+clean+inconsistent, acting [15,13]

$ rados list-inconsistent-obj 10.10d
{"epoch":12138,"inconsistents":[]}

"ceph pg query" (see below) on that PG does report num_scrub_errors=1,
num_shallow_scrub_errors=1, and num_objects_dirty=1. "osd scrub auto
repair = true" is set on all OSDs, but the PG never auto-repairs. (This
is a test cluster, the pool size is 2 — this may preclude auto repair
from ever kicking in; I'm not sure on that one.)

"ceph pg repair" does repair, but the issue reappears on the next
scheduled scrub.

This issue was first discovered while the cluster was on
Jewel/Filestore. In an event like this I would normally suspect either a
problem with an individual OSD, or a bug in the FileStore code. But the
cluster has had *all* of it's OSDs replaced since, as part of a full
Jewel→Luminous→Nautilus upgrade and a FileStore→BlueStore conversion.
The issue still persists.

A full "ceph pg 10.10d query" result is below. If anyone has ideas on
how to permanently fix this issue, I'd be most grateful.

Thanks!

Cheers,
Florian




{
    "state": "active+clean+inconsistent",
    "snap_trimq": "[]",
    "snap_trimq_len": 0,
    "epoch": 12143,
    "up": [
        15,
        13
    ],
    "acting": [
        15,
        13
    ],
    "acting_recovery_backfill": [
        "13",
        "15"
    ],
    "info": {
        "pgid": "10.10d",
        "last_update": "100'11",
        "last_complete": "100'11",
        "log_tail": "0'0",
        "last_user_version": 11,
        "last_backfill": "MAX",
        "last_backfill_bitwise": 0,
        "purged_snaps": [],
        "history": {
            "epoch_created": 45,
            "epoch_pool_created": 45,
            "last_epoch_started": 12139,
            "last_interval_started": 12138,
            "last_epoch_clean": 12139,
            "last_interval_clean": 12138,
            "last_epoch_split": 0,
            "last_epoch_marked_full": 0,
            "same_up_since": 12138,
            "same_interval_since": 12138,
            "same_primary_since": 12114,
            "last_scrub": "100'11",
            "last_scrub_stamp": "2019-10-14 08:33:57.347097",
            "last_deep_scrub": "100'11",
            "last_deep_scrub_stamp": "2019-10-11 14:09:29.016946",
            "last_clean_scrub_stamp": "2019-10-11 14:09:29.016946"
        },
        "stats": {
            "version": "100'11",
            "reported_seq": "4927",
            "reported_epoch": "12143",
            "state": "active+clean+inconsistent",
            "last_fresh": "2019-10-14 08:33:57.347147",
            "last_change": "2019-10-14 08:33:57.347147",
            "last_active": "2019-10-14 08:33:57.347147",
            "last_peered": "2019-10-14 08:33:57.347147",
            "last_clean": "2019-10-14 08:33:57.347147",
            "last_became_active": "2019-10-11 14:44:09.312226",
            "last_became_peered": "2019-10-11 14:44:09.312226",
            "last_unstale": "2019-10-14 08:33:57.347147",
            "last_undegraded": "2019-10-14 08:33:57.347147",
            "last_fullsized": "2019-10-14 08:33:57.347147",
            "mapping_epoch": 12138,
            "log_start": "0'0",
            "ondisk_log_start": "0'0",
            "created": 45,
            "last_epoch_clean": 12139,
            "parent": "0.0",
            "parent_split_bits": 0,
            "last_scrub": "100'11",
            "last_scrub_stamp": "2019-10-14 08:33:57.347097",
            "last_deep_scrub": "100'11",
            "last_deep_scrub_stamp": "2019-10-11 14:09:29.016946",
            "last_clean_scrub_stamp": "2019-10-11 14:09:29.016946",
            "log_size": 11,
            "ondisk_log_size": 11,
            "stats_invalid": false,
            "dirty_stats_invalid": false,
            "omap_stats_invalid": false,
            "hitset_stats_invalid": false,
            "hitset_bytes_stats_invalid": true,
            "pin_stats_invalid": true,
            "manifest_stats_invalid": true,
            "snaptrimq_len": 0,
            "stat_sum": {
                "num_bytes": 11,
                "num_objects": 1,
                "num_object_clones": 0,
                "num_object_copies": 2,
                "num_objects_missing_on_primary": 0,
                "num_objects_missing": 0,
                "num_objects_degraded": 0,
                "num_objects_misplaced": 0,
                "num_objects_unfound": 0,
                "num_objects_dirty": 1,
                "num_whiteouts": 0,
                "num_read": 33,
                "num_read_kb": 22,
                "num_write": 11,
                "num_write_kb": 6,
                "num_scrub_errors": 1,
                "num_shallow_scrub_errors": 1,
                "num_deep_scrub_errors": 0,
                "num_objects_recovered": 2,
                "num_bytes_recovered": 22,
                "num_keys_recovered": 0,
                "num_objects_omap": 0,
                "num_objects_hit_set_archive": 0,
                "num_bytes_hit_set_archive": 0,
                "num_flush": 0,
                "num_flush_kb": 0,
                "num_evict": 0,
                "num_evict_kb": 0,
                "num_promote": 0,
                "num_flush_mode_high": 0,
                "num_flush_mode_low": 0,
                "num_evict_mode_some": 0,
                "num_evict_mode_full": 0,
                "num_objects_pinned": 0,
                "num_legacy_snapsets": 0,
                "num_large_omap_objects": 0,
                "num_objects_manifest": 0,
                "num_omap_bytes": 0,
                "num_omap_keys": 0,
                "num_objects_repaired": 0
            },
            "up": [
                15,
                13
            ],
            "acting": [
                15,
                13
            ],
            "avail_no_missing": [],
            "object_location_counts": [],
            "blocked_by": [],
            "up_primary": 15,
            "acting_primary": 15,
            "purged_snaps": []
        },
        "empty": 0,
        "dne": 0,
        "incomplete": 0,
        "last_epoch_started": 12139,
        "hit_set_history": {
            "current_last_update": "0'0",
            "history": []
        }
    },
    "peer_info": [
        {
            "peer": "13",
            "pgid": "10.10d",
            "last_update": "100'11",
            "last_complete": "100'11",
            "log_tail": "0'0",
            "last_user_version": 11,
            "last_backfill": "MAX",
            "last_backfill_bitwise": 0,
            "purged_snaps": [],
            "history": {
                "epoch_created": 45,
                "epoch_pool_created": 45,
                "last_epoch_started": 12139,
                "last_interval_started": 12138,
                "last_epoch_clean": 12139,
                "last_interval_clean": 12138,
                "last_epoch_split": 0,
                "last_epoch_marked_full": 0,
                "same_up_since": 12138,
                "same_interval_since": 12138,
                "same_primary_since": 12114,
                "last_scrub": "100'11",
                "last_scrub_stamp": "2019-10-14 08:33:57.347097",
                "last_deep_scrub": "100'11",
                "last_deep_scrub_stamp": "2019-10-11 14:09:29.016946",
                "last_clean_scrub_stamp": "2019-10-11 14:09:29.016946"
            },
            "stats": {
                "version": "100'11",
                "reported_seq": "36",
                "reported_epoch": "12113",
                "state": "active+undersized+degraded",
                "last_fresh": "2019-10-11 14:39:58.946532",
                "last_change": "2019-10-11 14:39:58.924989",
                "last_active": "2019-10-11 14:39:58.946532",
                "last_peered": "2019-10-11 14:39:58.946532",
                "last_clean": "2014-11-05 15:48:35.131248",
                "last_became_active": "2019-10-11 14:39:58.924989",
                "last_became_peered": "2019-10-11 14:39:58.924989",
                "last_unstale": "2019-10-11 14:39:58.946532",
                "last_undegraded": "2019-10-11 14:39:58.892352",
                "last_fullsized": "2019-10-11 14:39:58.892331",
                "mapping_epoch": 12138,
                "log_start": "0'0",
                "ondisk_log_start": "0'0",
                "created": 45,
                "last_epoch_clean": 12103,
                "parent": "0.0",
                "parent_split_bits": 0,
                "last_scrub": "100'11",
                "last_scrub_stamp": "2019-10-11 14:09:29.016946",
                "last_deep_scrub": "100'11",
                "last_deep_scrub_stamp": "2019-10-11 14:09:29.016946",
                "last_clean_scrub_stamp": "2019-10-11 14:09:29.016946",
                "log_size": 11,
                "ondisk_log_size": 11,
                "stats_invalid": false,
                "dirty_stats_invalid": false,
                "omap_stats_invalid": false,
                "hitset_stats_invalid": false,
                "hitset_bytes_stats_invalid": true,
                "pin_stats_invalid": true,
                "manifest_stats_invalid": true,
                "snaptrimq_len": 0,
                "stat_sum": {
                    "num_bytes": 11,
                    "num_objects": 1,
                    "num_object_clones": 0,
                    "num_object_copies": 2,
                    "num_objects_missing_on_primary": 0,
                    "num_objects_missing": 0,
                    "num_objects_degraded": 1,
                    "num_objects_misplaced": 0,
                    "num_objects_unfound": 0,
                    "num_objects_dirty": 1,
                    "num_whiteouts": 0,
                    "num_read": 33,
                    "num_read_kb": 22,
                    "num_write": 11,
                    "num_write_kb": 6,
                    "num_scrub_errors": 0,
                    "num_shallow_scrub_errors": 0,
                    "num_deep_scrub_errors": 0,
                    "num_objects_recovered": 2,
                    "num_bytes_recovered": 22,
                    "num_keys_recovered": 0,
                    "num_objects_omap": 0,
                    "num_objects_hit_set_archive": 0,
                    "num_bytes_hit_set_archive": 0,
                    "num_flush": 0,
                    "num_flush_kb": 0,
                    "num_evict": 0,
                    "num_evict_kb": 0,
                    "num_promote": 0,
                    "num_flush_mode_high": 0,
                    "num_flush_mode_low": 0,
                    "num_evict_mode_some": 0,
                    "num_evict_mode_full": 0,
                    "num_objects_pinned": 0,
                    "num_legacy_snapsets": 0,
                    "num_large_omap_objects": 0,
                    "num_objects_manifest": 0,
                    "num_omap_bytes": 0,
                    "num_omap_keys": 0,
                    "num_objects_repaired": 0
                },
                "up": [
                    15,
                    13
                ],
                "acting": [
                    15,
                    13
                ],
                "avail_no_missing": [
                    "13"
                ],
                "object_location_counts": [
                    {
                        "shards": "13",
                        "objects": 1
                    }
                ],
                "blocked_by": [],
                "up_primary": 15,
                "acting_primary": 15,
                "purged_snaps": []
            },
            "empty": 0,
            "dne": 0,
            "incomplete": 0,
            "last_epoch_started": 12139,
            "hit_set_history": {
                "current_last_update": "0'0",
                "history": []
            }
        }
    ],
    "recovery_state": [
        {
            "name": "Started/Primary/Active",
            "enter_time": "2019-10-11 14:44:09.175574",
            "might_have_unfound": [],
            "recovery_progress": {
                "backfill_targets": [],
                "waiting_on_backfill": [],
                "last_backfill_started": "MIN",
                "backfill_info": {
                    "begin": "MIN",
                    "end": "MIN",
                    "objects": []
                },
                "peer_backfill_info": [],
                "backfills_in_flight": [],
                "recovering": [],
                "pg_backend": {
                    "pull_from_peer": [],
                    "pushing": []
                }
            },
            "scrub": {
                "scrubber.epoch_start": "12138",
                "scrubber.active": false,
                "scrubber.state": "INACTIVE",
                "scrubber.start": "MIN",
                "scrubber.end": "MIN",
                "scrubber.max_end": "MIN",
                "scrubber.subset_last_update": "0'0",
                "scrubber.deep": false,
                "scrubber.waiting_on_whom": []
            }
        },
        {
            "name": "Started",
            "enter_time": "2019-10-11 14:44:08.833757"
        }
    ],
    "agent_state": {}
}
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