Re: revisiting uneven CRUSH distributions

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Hello Loic,

thanks for clarification. Sounds good so far. It it planned to get
packages out of the repo so we do not need to have pip and a compiler
installed on the systems?

Greets,
Stefan

Am 15.05.2017 um 22:35 schrieb Loic Dachary:
> 
> 
> On 05/15/2017 09:08 PM, Stefan Priebe - Profihost AG wrote:
>> Hello Loic,
>>
>> sounds good but my initial question was if this shouldn't be integrated
>> in ceph-deploy - so when you add OSDs it also does the correct reweight?
> 
> Ideally it should be fully transparent and we can forget the problem ever existed. I think we'll get there, maybe with a ceph-mgr task running on a regular basis to gradually optimize when it can't be done in real time. It won't be ready for Luminous but it could be for M*.
> 
> Cheers
> 
>> Greets,
>> Stefan
>>
>> Am 14.05.2017 um 19:46 schrieb Loic Dachary:
>>> Hi Stefan,
>>>
>>> A new python-crush[1] subcommand will be available next week that you could use to rebalance your clusters. You give it a crushmap and it optimizes the weights to fix the uneven distribution. It can produce a series of crushmaps, each with a small modification so that you can gradually improve the situation and better control how many PGs are moving.
>>>
>>> Would that be useful for the clusters you have ?
>>>
>>> Cheers
>>>
>>> [1] http://crush.readthedocs.io/
>>>
>>> On 05/02/2017 09:32 AM, Loic Dachary wrote:
>>>>
>>>>
>>>> On 05/02/2017 07:43 AM, Stefan Priebe - Profihost AG wrote:
>>>>> Hi Loic,
>>>>>
>>>>> yes i didn't changed them to straw2 as i didn't saw any difference. I
>>>>> switched to straw2 now but it didn't change anything at all.
>>>>
>>>> straw vs straw2 is not responsible for the uneven distribution you're seeing. I meant to say the optimization only works on straw2 buckets, it is not implemented for straw buckets.
>>>>
>>>>> If i use those weights manuall i've to adjust them on every crush change
>>>>> on the cluster? That's something i don't really like to do.
>>>>
>>>> This is not practical indeed :-) I'm hoping python-crush can automate that.
>>>>
>>>> Cheers
>>>>
>>>>> Greets,
>>>>> Stefan
>>>>>
>>>>> Am 02.05.2017 um 01:12 schrieb Loic Dachary:
>>>>>> It is working, with straw2 (your cluster still is using straw).
>>>>>>
>>>>>> For instance for one host it goes from:
>>>>>>
>>>>>>         ~expected~  ~objects~  ~over/under used %~  ~delta~  ~delta%~
>>>>>> ~name~
>>>>>> osd.24         149        159                 6.65     10.0      6.71
>>>>>> osd.29         149        159                 6.65     10.0      6.71
>>>>>> osd.0           69         77                11.04      8.0     11.59
>>>>>> osd.2           69         69                -0.50      0.0      0.00
>>>>>> osd.42         149        148                -0.73     -1.0     -0.67
>>>>>> osd.1           69         62               -10.59     -7.0    -10.14
>>>>>> osd.23          69         62               -10.59     -7.0    -10.14
>>>>>> osd.36         149        132               -11.46    -17.0    -11.41
>>>>>>
>>>>>> to
>>>>>>
>>>>>>         ~expected~  ~objects~  ~over/under used %~  ~delta~  ~delta%~
>>>>>> ~name~
>>>>>> osd.0           69         69                -0.50      0.0      0.00
>>>>>> osd.23          69         69                -0.50      0.0      0.00
>>>>>> osd.24         149        149                -0.06      0.0      0.00
>>>>>> osd.29         149        149                -0.06      0.0      0.00
>>>>>> osd.36         149        149                -0.06      0.0      0.00
>>>>>> osd.1           69         68                -1.94     -1.0     -1.45
>>>>>> osd.2           69         68                -1.94     -1.0     -1.45
>>>>>> osd.42         149        147                -1.40     -2.0     -1.34
>>>>>>
>>>>>> By changing the weights to
>>>>>>
>>>>>> [0.6609248140022604, 0.9148542821020436, 0.8174711575190294, 0.8870680217468655, 1.6031393139865695, 1.5871079208467038, 1.8784764188501162, 1.7308530904776616]
>>>>>>
>>>>>> And you could set these weights on the crushmap, there would be no need for backporting.
>>>>>>
>>>>>>
>>>>>> On 05/01/2017 08:06 PM, Stefan Priebe - Profihost AG wrote:
>>>>>>> Am 01.05.2017 um 19:47 schrieb Loic Dachary:
>>>>>>>> Hi Stefan,
>>>>>>>>
>>>>>>>> On 05/01/2017 07:15 PM, Stefan Priebe - Profihost AG wrote:
>>>>>>>>> That sounds amazing! Is there any chance this will be backported to jewel?
>>>>>>>>
>>>>>>>> There should be ways to make that work with kraken and jewel. It may not even require a backport. If you know of a cluster with an uneven distribution, it would be great if you could send the crushmap so that I can test the algorithm. I'm still not sure this is the right solution and it would help confirm that.
>>>>>>>
>>>>>>> I've lots of them ;-)
>>>>>>>
>>>>>>> Will sent you one via private e-mail in some minutes.
>>>>>>>
>>>>>>> Greets,
>>>>>>> Stefan
>>>>>>>
>>>>>>>> Cheers
>>>>>>>>
>>>>>>>>>
>>>>>>>>> Greets,
>>>>>>>>> Stefan
>>>>>>>>>
>>>>>>>>> Am 30.04.2017 um 16:15 schrieb Loic Dachary:
>>>>>>>>>> Hi,
>>>>>>>>>>
>>>>>>>>>> Ideally CRUSH distributes PGs evenly on OSDs so that they all fill in
>>>>>>>>>> the same proportion. If an OSD is 75% full, it is expected that all
>>>>>>>>>> other OSDs are also 75% full.
>>>>>>>>>>
>>>>>>>>>> In reality the distribution is even only when more than 100,000 PGs
>>>>>>>>>> are distributed in a pool of size 1 (i.e. no replication).
>>>>>>>>>>
>>>>>>>>>> In small clusters there are a few thousands PGs and it is not enough
>>>>>>>>>> to get an even distribution. Running the following with
>>>>>>>>>> python-crush[1], shows a 15% difference when distributing 1,000 PGs on
>>>>>>>>>> 6 devices. Only with 1,000,000 PGs does the difference drop under 1%.
>>>>>>>>>>
>>>>>>>>>>   for PGs in 1000 10000 100000 1000000 ; do
>>>>>>>>>>     crush analyze --replication-count 1 \
>>>>>>>>>>                   --type device \
>>>>>>>>>>                   --values-count $PGs \
>>>>>>>>>>                   --rule data \
>>>>>>>>>>                   --crushmap tests/sample-crushmap.json
>>>>>>>>>>   done
>>>>>>>>>>
>>>>>>>>>> In larger clusters, even though a greater number of PGs are
>>>>>>>>>> distributed, there are at most a few dozens devices per host and the
>>>>>>>>>> problem remains. On a machine with 24 OSDs each expected to handle a
>>>>>>>>>> few hundred PGs, a total of a few thousands PGs are distributed which
>>>>>>>>>> is not enough to get an even distribution.
>>>>>>>>>>
>>>>>>>>>> There is a secondary reason for the distribution to be uneven, when
>>>>>>>>>> there is more than one replica. The second replica must be on a
>>>>>>>>>> different device than the first replica. This conditional probability
>>>>>>>>>> is not taken into account by CRUSH and would create an uneven
>>>>>>>>>> distribution if more than 10,000 PGs were distributed per OSD[2]. But
>>>>>>>>>> a given OSD can only handle a few hundred PGs and this conditional
>>>>>>>>>> probability bias is dominated by the uneven distribution caused by the
>>>>>>>>>> low number of PGs.
>>>>>>>>>>
>>>>>>>>>> The uneven CRUSH distributions are always caused by a low number of
>>>>>>>>>> samples, even in large clusters. Since this noise (i.e. the difference
>>>>>>>>>> between the desired distribution and the actual distribution) is
>>>>>>>>>> random, it cannot be fixed by optimizations methods.  The
>>>>>>>>>> Nedler-Mead[3] simplex converges to a local minimum that is far from
>>>>>>>>>> the optimal minimum in many cases. Broyden–Fletcher–Goldfarb–Shanno[4]
>>>>>>>>>> fails to find a gradient that would allow it to converge faster. And
>>>>>>>>>> even if it did, the local minimum found would be as often wrong as
>>>>>>>>>> with Nedler-Mead, only it would go faster. A least mean squares
>>>>>>>>>> filter[5] is equally unable to suppress the noise created by the
>>>>>>>>>> uneven distribution because no coefficients can model a random noise.
>>>>>>>>>>
>>>>>>>>>> With that in mind, I implemented a simple optimization algorithm[6]
>>>>>>>>>> which was first suggested by Thierry Delamare a few weeks ago. It goes
>>>>>>>>>> like this:
>>>>>>>>>>
>>>>>>>>>>     - Distribute the desired number of PGs[7]
>>>>>>>>>>     - Subtract 1% of the weight of the OSD that is the most over used
>>>>>>>>>>     - Add the subtracted weight to the OSD that is the most under used
>>>>>>>>>>     - Repeat until the Kullback–Leibler divergence[8] is small enough
>>>>>>>>>>
>>>>>>>>>> Quoting Adam Kupczyk, this works because:
>>>>>>>>>>
>>>>>>>>>>   "...CRUSH is not random proces at all, it behaves in numerically
>>>>>>>>>>    stable way.  Specifically, if we increase weight on one node, we
>>>>>>>>>>    will get more PGs on this node and less on every other node:
>>>>>>>>>>    CRUSH([10.1, 10, 10, 5, 5]) -> [146(+3), 152, 156(-2), 70(-1), 76]"
>>>>>>>>>>
>>>>>>>>>> A nice side effect of this optimization algorithm is that it does not
>>>>>>>>>> change the weight of the bucket containing the items being
>>>>>>>>>> optimized. It is local to a bucket with no influence on the other
>>>>>>>>>> parts of the crushmap (modulo the conditional probability bias).
>>>>>>>>>>
>>>>>>>>>> In all tests the situation improves at least by an order of
>>>>>>>>>> magnitude. For instance when there is a 30% difference between two
>>>>>>>>>> OSDs, it is down to less than 3% after optimization.
>>>>>>>>>>
>>>>>>>>>> The tests for the optimization method can be run with
>>>>>>>>>>
>>>>>>>>>>    git clone -b wip-fix-2 http://libcrush.org/dachary/python-crush.git
>>>>>>>>>>    tox -e py27 -- -s -vv -k test_fix tests/test_analyze.py
>>>>>>>>>>
>>>>>>>>>> If anyone think of a reason why this algorithm won't work in some
>>>>>>>>>> cases, please speak up :-)
>>>>>>>>>>
>>>>>>>>>> Cheers
>>>>>>>>>>
>>>>>>>>>> [1] python-crush http://crush.readthedocs.io/
>>>>>>>>>> [2] crush multipick anomaly http://marc.info/?l=ceph-devel&m=148539995928656&w=2
>>>>>>>>>> [3] Nedler-Mead https://en.wikipedia.org/wiki/Nelder%E2%80%93Mead_method
>>>>>>>>>> [4] L-BFGS-B https://docs.scipy.org/doc/scipy-0.18.1/reference/optimize.minimize-lbfgsb.html#optimize-minimize-lbfgsb
>>>>>>>>>> [5] Least mean squares filter https://en.wikipedia.org/wiki/Least_mean_squares_filter
>>>>>>>>>> [6] http://libcrush.org/dachary/python-crush/blob/c6af9bbcbef7123af84ee4d75d63dd1b967213a2/tests/test_analyze.py#L39
>>>>>>>>>> [7] Predicting Ceph PG placement http://dachary.org/?p=4020
>>>>>>>>>> [8] Kullback–Leibler divergence https://en.wikipedia.org/wiki/Kullback%E2%80%93Leibler_divergence
>>>>>>>>>>
>>>>>>>>> --
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>>>>>>>>>
>>>>>>>>
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>>>>>>
>>>>>
>>>>
>>>
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