Re: Ubuntu 12.04 MDS tcmalloc leaks

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standby-replay

On Mon, Jun 23, 2014 at 3:27 PM, Gregory Farnum <greg@xxxxxxxxxxx> wrote:
> Ah, excellent. What standby modes are you using?
> -Greg
> Software Engineer #42 @ http://inktank.com | http://ceph.com
>
>
> On Mon, Jun 23, 2014 at 2:54 PM, Milosz Tanski <milosz@xxxxxxxxx> wrote:
>> I've spent more time looking at this over the long time frame (since my last
>> email in April) and I think I'm closer to understanding to what's going on
>> here. I believe I was wrong in my original assumption that this is caused by
>> tcmalloc since I tried this without tcmalloc (using glibc) and I was still
>> exhibiting behavior.
>>
>> Having said that I think came onto a suggestion what might be wrong. When
>> doing a version upgrade my MDS server primary / standby have switched... and
>> now the other mds sever that was never running into MDS OOM scenarios has
>> started going it and the one that was having the issue stopped. I ended up
>> swapping the standby a couple times and it looks like it's the standby code
>> that's causing this leak.
>>
>> TL;DR Standby is the one the leak... not sure what it is, but the primary
>> doesn't exhibit this behavior.
>>
>> Best
>> - Milosz
>>
>>
>> On Mon, Apr 14, 2014 at 3:11 PM, Milosz Tanski <milosz@xxxxxxxxx> wrote:
>>>
>>> Sorry for not including the last on last email. It was an accident.
>>>
>>> On Fri, Apr 11, 2014 at 6:23 PM, Gregory Farnum <greg@xxxxxxxxxxx> wrote:
>>> > On Fri, Apr 11, 2014 at 11:07 AM, Milosz Tanski <milosz@xxxxxxxxx>
>>> > wrote:
>>> >> On Fri, Apr 11, 2014 at 1:07 PM, Gregory Farnum <greg@xxxxxxxxxxx>
>>> >> wrote:
>>> >>> On Fri, Apr 11, 2014 at 8:59 AM, Milosz Tanski <milosz@xxxxxxxxx>
>>> >>> wrote:
>>> >>>> I'd like to restart this debate about tcmalloc slow leaks in MDS.
>>> >>>> This
>>> >>>> time around I have some charts. Looking at OSDs and MONs, it doesn't
>>> >>>> seam to affect those (as much).
>>> >>>>
>>> >>>> Here's the chart: http://i.imgur.com/xMCINAD.png The first two humps
>>> >>>> are the latest stable MDS version with tcmalloc till MDS gets killed
>>> >>>> by the OOM killer. The last restart MDS build of the same git tag
>>> >>>> without tcmalloc linked into it.
>>> >>>
>>> >>> That's interesting, but your graph cuts off before we can really see
>>> >>> the long-term behavior of the no-tcmalloc case. :) What's the
>>> >>> longer-term pattern look like?
>>> >>
>>> >> I'm only about two weeks into running without the allocator. I'm going
>>> >> to continue running it and report back in two weeks and a month. Sadly
>>> >> it takes a long time to test / reproduce the issue.
>>> >
>>> > Hmm, that makes it sound to me like it's not a tcmalloc issue, but
>>> > something changing in MDS state (a new workload that loads too much
>>> > into memory or something).
>>>
>>> 13 days into last startup so far and the needle hasn't move on memory
>>> usage (stable since 3 days in). Previously it took 20 days (twice in a
>>> row) to get to OOM. But by now it would have grown much larger. The
>>> workload hasn't changed.
>>>
>>> >
>>> >>>> I know that older tcmalloc version have leaks when allocating larger
>>> >>>> blocks of memory:
>>> >>>> https://code.google.com/p/gperftools/issues/detail?id=368 So it's
>>> >>>> possible that there is some kind of allocation pattern in MDS that
>>> >>>> causes this behavior or exposes this tcmalloc bug.
>>> >>>
>>> >>> Hrm, we do use memory pools in the MDS that the OSD and monitor do
>>> >>> not, so that could be influencing things.
>>> >>
>>> >> The issue I linked to is caused generally by making large allocations.
>>> >> It's my understanding that prior to the fix was very bad
>>> >> fragmenetation with large allocations.
>>> >>
>>> >>>
>>> >>>> Last time I bought it up there was resistance to tossing tcmalloc,
>>> >>>> which is fine. What I'd like to see is not linking against tcmalloc
>>> >>>> on
>>> >>>> systems that are know to have a buggy tcmalloc (in this case ubuntu
>>> >>>> 12.04, older Debian systems).
>>> >>>
>>> >>> The issue is that back when we did the investigation and testing (on
>>> >>> older Debian systems) that made us switch to tcmalloc:
>>> >>> 1) Memory growth without tcmalloc on the OSDs and monitor was so bad
>>> >>> as to make them essentially unusable,
>>> >>> 2) the MDS also behaved better with it (though I don't remember how
>>> >>> much)
>>> >>> 3) tcmalloc supplies some really nice memory analysis tools that I'd
>>> >>> like to keep around.
>>> >>>
>>> >>> So we'd need to do something like find a different allocator that
>>> >>> works for all three processes, or link the OSD and monitor with it but
>>> >>> not the MDS *and* demonstrate that the default allocators in each of
>>> >>> our platforms work for the MDS without issue (or go down the rat's
>>> >>> nest of selecting allocator based on platform). Before we embark on
>>> >>> that I'd like to get more data about what's causing the memory growth.
>>> >>> Can you gather some heap dumps and stats? Have you tried just
>>> >>> instructing the MDS to release unused memory when it passes some
>>> >>> threshold?
>>> >>
>>> >> For another internal project we started off with tcmalloc and switched
>>> >> to jemalloc. We ran into the same kind of pattern with tcmalloc on
>>> >> ubuntu 12.04.
>>> >>
>>> >> Now in our case doing database equivalent of sorting 10s to low 100s
>>> >> of gigabytes in background process (maintenance jobs for compacting
>>> >> and dup removal) we did this in blocks of 0.25g using merge sort.
>>> >> After about a day of runtime (when a lot of these jobs ran) we would
>>> >> start running into OOM cases. I enabled the tcmalloc debugger (via
>>> >> flags) and it would log every 1gb allocated. Tcmalloc reported that
>>> >> the app was using low gigabytes of working memory during busy times
>>> >> and and going into the low 10s of megabytes at idle times. Yet despite
>>> >> those the memory consumed by the process was reaching 40 gigs.
>>> >
>>> > Did you try using the HeapRelease() command (or whatever it's called)?
>>> > A few users have reported that tcmalloc was broken in one way or
>>> > another on their platform (though usually on something like Gentoo
>>> > rather than Ubuntu Precise!) and that call has invariably dealt with
>>> > the issue. *shrug*
>>>
>>> For our use case I did end up playing with the various configuration
>>> knobs for TCMALLOC (via environmental variables.) None of them ended
>>> up helping (release rate, etc). We did not end up calling the tcmalloc
>>> functions directly (like HeapRelease) because we didn't want to have
>>> our app depend on tcmalloc. And, quite frankly I thought it was silly
>>> for us to jump through a lot of hoops in order to make the allocator
>>> not explode.
>>>
>>> >
>>> >> We considered building tcmalloc from source, but noticed that redis in
>>> >> ubuntu/debian jemalloc and switched to using it. In this case, yes I'm
>>> >> shilling for jemalloc because it solved similar issues with
>>> >> experienced. And after doing significant testing on performance to
>>> >> compare the two it was within margin of error. Recent version of
>>> >> jemalloc support can output heap profiling information in a format
>>> >> understood by pprof (the google perftools).
>>> >
>>> > Interesting. Next time we wrangle some time to look at these issues
>>> > I'll check jemalloc out.
>>> > -Greg
>>> > Software Engineer #42 @ http://inktank.com | http://ceph.com
>>>
>>>
>>>
>>> --
>>> Milosz Tanski
>>> CTO
>>> 10 East 53rd Street, 37th floor
>>> New York, NY 10022
>>>
>>> p: 646-253-9055
>>> e: milosz@xxxxxxxxx
>>
>>
>>
>>
>> --
>> Milosz Tanski
>> CTO
>> 16 East 34th Street, 15th floor
>> New York, NY 10016
>>
>> p: 646-253-9055
>> e: milosz@xxxxxxxxx



-- 
Milosz Tanski
CTO
16 East 34th Street, 15th floor
New York, NY 10016

p: 646-253-9055
e: milosz@xxxxxxxxx
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