Re: Ubuntu 12.04 MDS tcmalloc leaks

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Ah, excellent. What standby modes are you using?
-Greg
Software Engineer #42 @ http://inktank.com | http://ceph.com


On Mon, Jun 23, 2014 at 2:54 PM, Milosz Tanski <milosz@xxxxxxxxx> wrote:
> I've spent more time looking at this over the long time frame (since my last
> email in April) and I think I'm closer to understanding to what's going on
> here. I believe I was wrong in my original assumption that this is caused by
> tcmalloc since I tried this without tcmalloc (using glibc) and I was still
> exhibiting behavior.
>
> Having said that I think came onto a suggestion what might be wrong. When
> doing a version upgrade my MDS server primary / standby have switched... and
> now the other mds sever that was never running into MDS OOM scenarios has
> started going it and the one that was having the issue stopped. I ended up
> swapping the standby a couple times and it looks like it's the standby code
> that's causing this leak.
>
> TL;DR Standby is the one the leak... not sure what it is, but the primary
> doesn't exhibit this behavior.
>
> Best
> - Milosz
>
>
> On Mon, Apr 14, 2014 at 3:11 PM, Milosz Tanski <milosz@xxxxxxxxx> wrote:
>>
>> Sorry for not including the last on last email. It was an accident.
>>
>> On Fri, Apr 11, 2014 at 6:23 PM, Gregory Farnum <greg@xxxxxxxxxxx> wrote:
>> > On Fri, Apr 11, 2014 at 11:07 AM, Milosz Tanski <milosz@xxxxxxxxx>
>> > wrote:
>> >> On Fri, Apr 11, 2014 at 1:07 PM, Gregory Farnum <greg@xxxxxxxxxxx>
>> >> wrote:
>> >>> On Fri, Apr 11, 2014 at 8:59 AM, Milosz Tanski <milosz@xxxxxxxxx>
>> >>> wrote:
>> >>>> I'd like to restart this debate about tcmalloc slow leaks in MDS.
>> >>>> This
>> >>>> time around I have some charts. Looking at OSDs and MONs, it doesn't
>> >>>> seam to affect those (as much).
>> >>>>
>> >>>> Here's the chart: http://i.imgur.com/xMCINAD.png The first two humps
>> >>>> are the latest stable MDS version with tcmalloc till MDS gets killed
>> >>>> by the OOM killer. The last restart MDS build of the same git tag
>> >>>> without tcmalloc linked into it.
>> >>>
>> >>> That's interesting, but your graph cuts off before we can really see
>> >>> the long-term behavior of the no-tcmalloc case. :) What's the
>> >>> longer-term pattern look like?
>> >>
>> >> I'm only about two weeks into running without the allocator. I'm going
>> >> to continue running it and report back in two weeks and a month. Sadly
>> >> it takes a long time to test / reproduce the issue.
>> >
>> > Hmm, that makes it sound to me like it's not a tcmalloc issue, but
>> > something changing in MDS state (a new workload that loads too much
>> > into memory or something).
>>
>> 13 days into last startup so far and the needle hasn't move on memory
>> usage (stable since 3 days in). Previously it took 20 days (twice in a
>> row) to get to OOM. But by now it would have grown much larger. The
>> workload hasn't changed.
>>
>> >
>> >>>> I know that older tcmalloc version have leaks when allocating larger
>> >>>> blocks of memory:
>> >>>> https://code.google.com/p/gperftools/issues/detail?id=368 So it's
>> >>>> possible that there is some kind of allocation pattern in MDS that
>> >>>> causes this behavior or exposes this tcmalloc bug.
>> >>>
>> >>> Hrm, we do use memory pools in the MDS that the OSD and monitor do
>> >>> not, so that could be influencing things.
>> >>
>> >> The issue I linked to is caused generally by making large allocations.
>> >> It's my understanding that prior to the fix was very bad
>> >> fragmenetation with large allocations.
>> >>
>> >>>
>> >>>> Last time I bought it up there was resistance to tossing tcmalloc,
>> >>>> which is fine. What I'd like to see is not linking against tcmalloc
>> >>>> on
>> >>>> systems that are know to have a buggy tcmalloc (in this case ubuntu
>> >>>> 12.04, older Debian systems).
>> >>>
>> >>> The issue is that back when we did the investigation and testing (on
>> >>> older Debian systems) that made us switch to tcmalloc:
>> >>> 1) Memory growth without tcmalloc on the OSDs and monitor was so bad
>> >>> as to make them essentially unusable,
>> >>> 2) the MDS also behaved better with it (though I don't remember how
>> >>> much)
>> >>> 3) tcmalloc supplies some really nice memory analysis tools that I'd
>> >>> like to keep around.
>> >>>
>> >>> So we'd need to do something like find a different allocator that
>> >>> works for all three processes, or link the OSD and monitor with it but
>> >>> not the MDS *and* demonstrate that the default allocators in each of
>> >>> our platforms work for the MDS without issue (or go down the rat's
>> >>> nest of selecting allocator based on platform). Before we embark on
>> >>> that I'd like to get more data about what's causing the memory growth.
>> >>> Can you gather some heap dumps and stats? Have you tried just
>> >>> instructing the MDS to release unused memory when it passes some
>> >>> threshold?
>> >>
>> >> For another internal project we started off with tcmalloc and switched
>> >> to jemalloc. We ran into the same kind of pattern with tcmalloc on
>> >> ubuntu 12.04.
>> >>
>> >> Now in our case doing database equivalent of sorting 10s to low 100s
>> >> of gigabytes in background process (maintenance jobs for compacting
>> >> and dup removal) we did this in blocks of 0.25g using merge sort.
>> >> After about a day of runtime (when a lot of these jobs ran) we would
>> >> start running into OOM cases. I enabled the tcmalloc debugger (via
>> >> flags) and it would log every 1gb allocated. Tcmalloc reported that
>> >> the app was using low gigabytes of working memory during busy times
>> >> and and going into the low 10s of megabytes at idle times. Yet despite
>> >> those the memory consumed by the process was reaching 40 gigs.
>> >
>> > Did you try using the HeapRelease() command (or whatever it's called)?
>> > A few users have reported that tcmalloc was broken in one way or
>> > another on their platform (though usually on something like Gentoo
>> > rather than Ubuntu Precise!) and that call has invariably dealt with
>> > the issue. *shrug*
>>
>> For our use case I did end up playing with the various configuration
>> knobs for TCMALLOC (via environmental variables.) None of them ended
>> up helping (release rate, etc). We did not end up calling the tcmalloc
>> functions directly (like HeapRelease) because we didn't want to have
>> our app depend on tcmalloc. And, quite frankly I thought it was silly
>> for us to jump through a lot of hoops in order to make the allocator
>> not explode.
>>
>> >
>> >> We considered building tcmalloc from source, but noticed that redis in
>> >> ubuntu/debian jemalloc and switched to using it. In this case, yes I'm
>> >> shilling for jemalloc because it solved similar issues with
>> >> experienced. And after doing significant testing on performance to
>> >> compare the two it was within margin of error. Recent version of
>> >> jemalloc support can output heap profiling information in a format
>> >> understood by pprof (the google perftools).
>> >
>> > Interesting. Next time we wrangle some time to look at these issues
>> > I'll check jemalloc out.
>> > -Greg
>> > Software Engineer #42 @ http://inktank.com | http://ceph.com
>>
>>
>>
>> --
>> Milosz Tanski
>> CTO
>> 10 East 53rd Street, 37th floor
>> New York, NY 10022
>>
>> p: 646-253-9055
>> e: milosz@xxxxxxxxx
>
>
>
>
> --
> Milosz Tanski
> CTO
> 16 East 34th Street, 15th floor
> New York, NY 10016
>
> p: 646-253-9055
> e: milosz@xxxxxxxxx
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