On 1/22/20 3:57 PM, Gary Stainburn wrote:
> I have managed to find out what happened in the yum update and it turns out it was a mess. It looks like the server ran out of memory in the middle and things then started to fail. Any advice on how to recover from this would be greatly appreciated
>
> The log below shows:
>
> [root@vps2 ~]# yum history info 22
> Loaded plugins: fastestmirror, langpacks
> Repository mariadb is listed more than once in the configuration
> Transaction ID : 22
> Begin time : Sun Jan 19 18:15:33 2020
> Begin rpmdb : 795:6c5cd82e3ada047c7071fea1524f41fd13fab6a1
> End time : 19:19:32 2020 (63 minutes)
> End rpmdb : 801:6d1b278ccbeef6f68ff494cb28eaed5c7be4124b
> User : root <root>
> Return-Code : Failure: 1
> Command Line : update
> Transaction performed with:
> Installed rpm-4.11.3-40.el7.x86_64 @anaconda
> Installed yum-3.4.3-163.el7.centos.noarch @anaconda
> Installed yum-plugin-fastestmirror-1.1.31-52.el7.noarch @anaconda
> Packages Altered:
> Updated MariaDB-client-10.4.10-1.el7.centos.x86_64 @mariadb
> Update 10.4.11-1.el7.centos.x86_64 @mariadb
> Updated MariaDB-common-10.4.10-1.el7.centos.x86_64 @mariadb
> Update 10.4.11-1.el7.centos.x86_64 @mariadb
> Updated MariaDB-compat-10.4.10-1.el7.centos.x86_64 @mariadb
> Update 10.4.11-1.el7.centos.x86_64 @mariadb
> ** Updated MariaDB-server-10.4.10-1.el7.centos.x86_64 @mariadb
> Loading mirror speeds from cached hostfile
> * base: mirror.as29550.net
> * epel: www.mirrorservice.org
> * extras: www.mirrorservice.org
> * remi-php73: mirrors.ukfast.co.uk
> * remi-safe: mirrors.ukfast.co.uk
> * updates: www.mirrorservice.org
> ** Update 10.4.11-1.el7.centos.x86_64 @?mariadb
> ** Updated MariaDB-shared-10.4.10-1.el7.centos.x86_64 @mariadb
> Update 10.4.11-1.el7.centos.x86_64 @mariadb
> ** Updated ca-certificates-2018.2.22-70.0.el7_5.noarch @anaconda
> ** Update 2019.2.32-76.el7_7.noarch @?updates
> Updated certbot-0.39.0-1.el7.noarch @epel
> Update 1.0.0-1.el7.noarch @epel
> Updated clamav-0.101.4-1.el7.x86_64 @epel
> Update 0.101.5-1.el7.x86_64 @epel
> Updated clamav-data-0.101.4-1.el7.noarch @epel
> Update 0.101.5-1.el7.noarch @epel
> Updated clamav-devel-0.101.4-1.el7.x86_64 @epel
> Update 0.101.5-1.el7.x86_64 @epel
> Updated clamav-filesystem-0.101.4-1.el7.noarch @epel
> Update 0.101.5-1.el7.noarch @epel
> Updated clamav-lib-0.101.4-1.el7.x86_64 @epel
> Update 0.101.5-1.el7.x86_64 @epel
> Updated clamav-update-0.101.4-1.el7.x86_64 @epel
> Update 0.101.5-1.el7.x86_64 @epel
> Updated clamd-0.101.4-1.el7.x86_64 @epel
> Update 0.101.5-1.el7.x86_64 @epel
> Updated curl-7.29.0-54.el7.x86_64 @anaconda
> Update 7.29.0-54.el7_7.1.x86_64 @updates
> Updated fail2ban-0.9.7-1.el7.noarch @epel
> Update 0.10.4-1.el7.noarch @epel
> Updated fail2ban-firewalld-0.9.7-1.el7.noarch @epel
> Update 0.10.4-1.el7.noarch @epel
> Updated fail2ban-sendmail-0.9.7-1.el7.noarch @epel
> Update 0.10.4-1.el7.noarch @epel
> Updated fail2ban-server-0.9.7-1.el7.noarch @epel
> Update 0.10.4-1.el7.noarch @epel
> Updated fail2ban-systemd-0.9.7-1.el7.noarch @epel
> Update 0.10.4-1.el7.noarch @epel
> Updated fribidi-1.0.2-1.el7.x86_64 @anaconda
> Update 1.0.2-1.el7_7.1.x86_64 @updates
> Updated iproute-4.11.0-25.el7.x86_64 @anaconda
> Update 4.11.0-25.el7_7.2.x86_64 @updates
> Install kernel-3.10.0-1062.9.1.el7.x86_64 @updates
> Updated kernel-headers-3.10.0-1062.4.3.el7.x86_64 @updates
> Update 3.10.0-1062.9.1.el7.x86_64 @updates
> Updated kernel-tools-3.10.0-1062.4.3.el7.x86_64 @updates
> Update 3.10.0-1062.9.1.el7.x86_64 @updates
> Updated kernel-tools-libs-3.10.0-1062.4.3.el7.x86_64 @updates
> Update 3.10.0-1062.9.1.el7.x86_64 @updates
> Updated libblkid-2.23.2-61.el7.x86_64 @anaconda
> Update 2.23.2-61.el7_7.1.x86_64 @updates
> Updated libcurl-7.29.0-54.el7.x86_64 @anaconda
> Update 7.29.0-54.el7_7.1.x86_64 @updates
> Updated libgs-9.25-2.el7_7.2.x86_64 @updates
> Update 9.25-2.el7_7.3.x86_64 @updates
> Updated libmount-2.23.2-61.el7.x86_64 @anaconda
> Update 2.23.2-61.el7_7.1.x86_64 @updates
> Updated libsmartcols-2.23.2-61.el7.x86_64 @anaconda
> Update 2.23.2-61.el7_7.1.x86_64 @updates
> Updated libsss_idmap-1.16.4-21.el7.x86_64 @anaconda
> Update 1.16.4-21.el7_7.1.x86_64 @updates
> Updated libsss_nss_idmap-1.16.4-21.el7.x86_64 @anaconda
> Update 1.16.4-21.el7_7.1.x86_64 @updates
> Updated libuuid-2.23.2-61.el7.x86_64 @anaconda
> Update 2.23.2-61.el7_7.1.x86_64 @updates
> Updated libwebp7-1.0.2-1.el7.remi.x86_64 @remi-safe
> Update 1.0.3-1.el7.remi.x86_64 @remi-safe
> ** Updated microcode_ctl-2:2.1-53.3.el7_7.x86_64 @updates
> Update 2:2.1-53.7.el7_7.x86_64 @updates
> Updated nss-3.44.0-4.el7.x86_64 @anaconda
> Update 3.44.0-7.el7_7.x86_64 @updates
> Updated nss-softokn-3.44.0-5.el7.x86_64 @anaconda
> Update 3.44.0-8.el7_7.x86_64 @updates
> Updated nss-softokn-freebl-3.44.0-5.el7.x86_64 @anaconda
> Update 3.44.0-8.el7_7.x86_64 @updates
> Updated nss-sysinit-3.44.0-4.el7.x86_64 @anaconda
> Update 3.44.0-7.el7_7.x86_64 @updates
> Updated nss-tools-3.44.0-4.el7.x86_64 @anaconda
> Update 3.44.0-7.el7_7.x86_64 @updates
> Updated nss-util-3.44.0-3.el7.x86_64 @anaconda
> Update 3.44.0-4.el7_7.x86_64 @updates
> Updated numactl-libs-2.0.12-3.el7.x86_64 @anaconda
> Update 2.0.12-3.el7_7.1.x86_64 @updates
> Updated pgdg-redhat-repo-42.0-5.noarch @/pgdg-centos10-10-2.noarch
> Update 42.0-6.noarch @pgdg10
> Updated php-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-cli-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-common-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-gd-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-json-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-ldap-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-mysqlnd-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-odbc-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-pdo-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> ** Updated php-pear-1:1.10.10-2.el7.remi.noarch @remi-php70
> ** Update 1:1.10.10-4.el7.remi.noarch @?remi-php73
> Updated php-pgsql-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-process-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-xml-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated php-xmlrpc-7.3.12-1.el7.remi.x86_64 @remi-php73
> Update 7.3.13-1.el7.remi.x86_64 @remi-php73
> Updated postgresql10-10.11-1PGDG.rhel7.x86_64 @pgdg10
> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
> Updated postgresql10-contrib-10.11-1PGDG.rhel7.x86_64 @pgdg10
> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
> Updated postgresql10-libs-10.11-1PGDG.rhel7.x86_64 @pgdg10
> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
> ** Updated postgresql10-server-10.11-1PGDG.rhel7.x86_64 @pgdg10
> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
> ** Updated proftpd-1.3.5e-7.el7.x86_64 @epel
> Update 1.3.5e-8.el7.x86_64 @epel
> Updated python-perf-3.10.0-1062.4.3.el7.x86_64 @updates
> Update 3.10.0-1062.9.1.el7.x86_64 @updates
> Updated python-requests-2.6.0-7.el7_7.noarch @updates
> Update 2.6.0-8.el7_7.noarch @updates
> Updated python2-acme-0.39.0-1.el7.noarch @epel
> Update 1.0.0-1.el7.noarch @epel
> Updated python2-certbot-0.39.0-1.el7.noarch @epel
> Update 1.0.0-1.el7.noarch @epel
> Updated python2-certbot-apache-0.39.0-1.el7.noarch @epel
> Update 1.0.0-1.el7.noarch @epel
> Updated selinux-policy-3.13.1-252.el7.1.noarch @updates
> Update 3.13.1-252.el7_7.6.noarch @updates
> Updated selinux-policy-targeted-3.13.1-252.el7.1.noarch @updates
> Update 3.13.1-252.el7_7.6.noarch @updates
> Updated sos-3.7-7.el7.centos.noarch @updates
> Update 3.7-10.el7.centos.noarch @updates
> ** Updated sssd-client-1.16.4-21.el7.x86_64 @anaconda
> Update 1.16.4-21.el7_7.1.x86_64 @updates
> Updated tcpdump-14:4.9.2-4.el7.x86_64 @anaconda
> Update 14:4.9.2-4.el7_7.1.x86_64 @updates
> Updated util-linux-2.23.2-61.el7.x86_64 @anaconda
> Update 2.23.2-61.el7_7.1.x86_64 @updates
> Scriptlet output:
> 1 error: Couldn't fork %post(libsss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory
> 2 error: Couldn't fork %post(libsss_nss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory
> 3 error: Couldn't fork %pre(ca-certificates-2019.2.32-76.el7_7.noarch): Cannot allocate memory
> 4 error: ca-certificates-2019.2.32-76.el7_7.noarch: install failed
> 5 error: Couldn't fork %post(certbot-1.0.0-1.el7.noarch): Cannot allocate memory
> 6 error: Couldn't fork %pre(MariaDB-server-10.4.11-1.el7.centos.x86_64): Cannot allocate memory
> 7 error: MariaDB-server-10.4.11-1.el7.centos.x86_64: install failed
> 8 error: Couldn't fork %post(sssd-client-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory
> 9 error: Couldn't fork %post(kernel-tools-3.10.0-1062.9.1.el7.x86_64): Cannot allocate memory
> 10 error: Couldn't fork %pre(php-pear-1:1.10.10-4.el7.remi.noarch): Cannot allocate memory
> 11 error: php-pear-1:1.10.10-4.el7.remi.noarch: install failed
> 12 warning: /etc/clamd.d/scan.conf created as /etc/clamd.d/scan.conf.rpmnew
> 13 error: Couldn't fork %triggerin(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate memory
> 14 error: php-pear-1:1.10.10-2.el7.remi.noarch: erase skipped
> 15 error: MariaDB-server-10.4.10-1.el7.centos.x86_64: erase skipped
> 16 error: Couldn't fork %preun(MariaDB-shared-10.4.10-1.el7.centos.x86_64): Cannot allocate memory
> 17 error: MariaDB-shared-10.4.10-1.el7.centos.x86_64: erase failed
> 18 error: Couldn't fork %postun(MariaDB-compat-10.4.10-1.el7.centos.x86_64): Cannot allocate memory
> 19 error: ca-certificates-2018.2.22-70.0.el7_5.noarch: erase skipped
> 20 error: Couldn't fork %preun(microcode_ctl-2:2.1-53.3.el7_7.x86_64): Cannot allocate memory
> 21 error: microcode_ctl-2:2.1-53.3.el7_7.x86_64: erase failed
> 22 error: Couldn't fork %preun(postgresql10-server-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory
> 23 error: postgresql10-server-10.11-1PGDG.rhel7.x86_64: erase failed
> 24 error: Couldn't fork %postun(libmount-2.23.2-61.el7.x86_64): Cannot allocate memory
> 25 error: Couldn't fork %preun(sssd-client-1.16.4-21.el7.x86_64): Cannot allocate memory
> 26 error: sssd-client-1.16.4-21.el7.x86_64: erase failed
> 27 error: Couldn't fork %postun(libblkid-2.23.2-61.el7.x86_64): Cannot allocate memory
> 28 error: Couldn't fork %postun(postgresql10-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory
> 29 error: Couldn't fork %postun(clamav-lib-0.101.4-1.el7.x86_64): Cannot allocate memory
> 30 error: Couldn't fork %postun(kernel-tools-3.10.0-1062.4.3.el7.x86_64): Cannot allocate memory
> 31 error: Couldn't fork %postun(libcurl-7.29.0-54.el7.x86_64): Cannot allocate memory
> 32 error: Couldn't fork %postun(nss-3.44.0-4.el7.x86_64): Cannot allocate memory
> 33 error: Couldn't fork %postun(nss-softokn-3.44.0-5.el7.x86_64): Cannot allocate memory
> 34 error: Couldn't fork %postun(nss-util-3.44.0-3.el7.x86_64): Cannot allocate memory
> 35 error: Couldn't fork %postun(postgresql10-libs-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory
> 36 error: Couldn't fork %postun(libuuid-2.23.2-61.el7.x86_64): Cannot allocate memory
> 37 error: Couldn't fork %postun(libsss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory
> 38 error: Couldn't fork %postun(libsss_nss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory
> 39 error: Couldn't fork %postun(libsmartcols-2.23.2-61.el7.x86_64): Cannot allocate memory
> 40 error: Couldn't fork %postun(libwebp7-1.0.2-1.el7.remi.x86_64): Cannot allocate memory
> 41 error: Couldn't fork %postun(fribidi-1.0.2-1.el7.x86_64): Cannot allocate memory
> 42 error: Couldn't fork %preun(proftpd-1.3.5e-7.el7.x86_64): Cannot allocate memory
> 43 error: proftpd-1.3.5e-7.el7.x86_64: erase failed
> 44 error: Couldn't fork %postun(numactl-libs-2.0.12-3.el7.x86_64): Cannot allocate memory
> 45 error: Couldn't fork %posttrans(kernel-3.10.0-1062.9.1.el7.x86_64): Cannot allocate memory
> 46 error: Couldn't fork %posttrans(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate memory
> history info
> [root@vps2 ~]#
>
Before you try the update again, you'll have to fix the reason for the
failure - add memory, or at least add a swap file.
You could check with
rpm -qa --last | head -20
which the latest packages are that were installed.
If the rpm database is corrupted, rebuild it with
rpm --rebuilddb
You can reinstall packages that may not be completely installed, using
rpm --reinstall PACKAGE_FILE
I'd rpm --erase the kernel package that does not boot.
HTH,
Kay
_______________________________________________
CentOS mailing list
CentOS@xxxxxxxxxx
https://lists.centos.org/mailman/listinfo/centos
