I have managed to find out what happened in the yum update and it turns out it was a mess. It looks like the server ran out of memory in the middle and things then started to fail. Any advice on how to recover from this would be greatly appreciated
The log below shows:
[root@vps2 ~]# yum history info 22
Loaded plugins: fastestmirror, langpacks
Repository mariadb is listed more than once in the configuration
Transaction ID : 22
Begin time : Sun Jan 19 18:15:33 2020
Begin rpmdb : 795:6c5cd82e3ada047c7071fea1524f41fd13fab6a1
End time : 19:19:32 2020 (63 minutes)
End rpmdb : 801:6d1b278ccbeef6f68ff494cb28eaed5c7be4124b
User : root <root>
Return-Code : Failure: 1
Command Line : update
Transaction performed with:
Installed rpm-4.11.3-40.el7.x86_64 @anaconda
Installed yum-3.4.3-163.el7.centos.noarch @anaconda
Installed yum-plugin-fastestmirror-1.1.31-52.el7.noarch @anaconda
Packages Altered:
Updated MariaDB-client-10.4.10-1.el7.centos.x86_64 @mariadb
Update 10.4.11-1.el7.centos.x86_64 @mariadb
Updated MariaDB-common-10.4.10-1.el7.centos.x86_64 @mariadb
Update 10.4.11-1.el7.centos.x86_64 @mariadb
Updated MariaDB-compat-10.4.10-1.el7.centos.x86_64 @mariadb
Update 10.4.11-1.el7.centos.x86_64 @mariadb
** Updated MariaDB-server-10.4.10-1.el7.centos.x86_64 @mariadb
Loading mirror speeds from cached hostfile
* base: mirror.as29550.net
* epel: www.mirrorservice.org
* extras: www.mirrorservice.org
* remi-php73: mirrors.ukfast.co.uk
* remi-safe: mirrors.ukfast.co.uk
* updates: www.mirrorservice.org
** Update 10.4.11-1.el7.centos.x86_64 @?mariadb
** Updated MariaDB-shared-10.4.10-1.el7.centos.x86_64 @mariadb
Update 10.4.11-1.el7.centos.x86_64 @mariadb
** Updated ca-certificates-2018.2.22-70.0.el7_5.noarch @anaconda
** Update 2019.2.32-76.el7_7.noarch @?updates
Updated certbot-0.39.0-1.el7.noarch @epel
Update 1.0.0-1.el7.noarch @epel
Updated clamav-0.101.4-1.el7.x86_64 @epel
Update 0.101.5-1.el7.x86_64 @epel
Updated clamav-data-0.101.4-1.el7.noarch @epel
Update 0.101.5-1.el7.noarch @epel
Updated clamav-devel-0.101.4-1.el7.x86_64 @epel
Update 0.101.5-1.el7.x86_64 @epel
Updated clamav-filesystem-0.101.4-1.el7.noarch @epel
Update 0.101.5-1.el7.noarch @epel
Updated clamav-lib-0.101.4-1.el7.x86_64 @epel
Update 0.101.5-1.el7.x86_64 @epel
Updated clamav-update-0.101.4-1.el7.x86_64 @epel
Update 0.101.5-1.el7.x86_64 @epel
Updated clamd-0.101.4-1.el7.x86_64 @epel
Update 0.101.5-1.el7.x86_64 @epel
Updated curl-7.29.0-54.el7.x86_64 @anaconda
Update 7.29.0-54.el7_7.1.x86_64 @updates
Updated fail2ban-0.9.7-1.el7.noarch @epel
Update 0.10.4-1.el7.noarch @epel
Updated fail2ban-firewalld-0.9.7-1.el7.noarch @epel
Update 0.10.4-1.el7.noarch @epel
Updated fail2ban-sendmail-0.9.7-1.el7.noarch @epel
Update 0.10.4-1.el7.noarch @epel
Updated fail2ban-server-0.9.7-1.el7.noarch @epel
Update 0.10.4-1.el7.noarch @epel
Updated fail2ban-systemd-0.9.7-1.el7.noarch @epel
Update 0.10.4-1.el7.noarch @epel
Updated fribidi-1.0.2-1.el7.x86_64 @anaconda
Update 1.0.2-1.el7_7.1.x86_64 @updates
Updated iproute-4.11.0-25.el7.x86_64 @anaconda
Update 4.11.0-25.el7_7.2.x86_64 @updates
Install kernel-3.10.0-1062.9.1.el7.x86_64 @updates
Updated kernel-headers-3.10.0-1062.4.3.el7.x86_64 @updates
Update 3.10.0-1062.9.1.el7.x86_64 @updates
Updated kernel-tools-3.10.0-1062.4.3.el7.x86_64 @updates
Update 3.10.0-1062.9.1.el7.x86_64 @updates
Updated kernel-tools-libs-3.10.0-1062.4.3.el7.x86_64 @updates
Update 3.10.0-1062.9.1.el7.x86_64 @updates
Updated libblkid-2.23.2-61.el7.x86_64 @anaconda
Update 2.23.2-61.el7_7.1.x86_64 @updates
Updated libcurl-7.29.0-54.el7.x86_64 @anaconda
Update 7.29.0-54.el7_7.1.x86_64 @updates
Updated libgs-9.25-2.el7_7.2.x86_64 @updates
Update 9.25-2.el7_7.3.x86_64 @updates
Updated libmount-2.23.2-61.el7.x86_64 @anaconda
Update 2.23.2-61.el7_7.1.x86_64 @updates
Updated libsmartcols-2.23.2-61.el7.x86_64 @anaconda
Update 2.23.2-61.el7_7.1.x86_64 @updates
Updated libsss_idmap-1.16.4-21.el7.x86_64 @anaconda
Update 1.16.4-21.el7_7.1.x86_64 @updates
Updated libsss_nss_idmap-1.16.4-21.el7.x86_64 @anaconda
Update 1.16.4-21.el7_7.1.x86_64 @updates
Updated libuuid-2.23.2-61.el7.x86_64 @anaconda
Update 2.23.2-61.el7_7.1.x86_64 @updates
Updated libwebp7-1.0.2-1.el7.remi.x86_64 @remi-safe
Update 1.0.3-1.el7.remi.x86_64 @remi-safe
** Updated microcode_ctl-2:2.1-53.3.el7_7.x86_64 @updates
Update 2:2.1-53.7.el7_7.x86_64 @updates
Updated nss-3.44.0-4.el7.x86_64 @anaconda
Update 3.44.0-7.el7_7.x86_64 @updates
Updated nss-softokn-3.44.0-5.el7.x86_64 @anaconda
Update 3.44.0-8.el7_7.x86_64 @updates
Updated nss-softokn-freebl-3.44.0-5.el7.x86_64 @anaconda
Update 3.44.0-8.el7_7.x86_64 @updates
Updated nss-sysinit-3.44.0-4.el7.x86_64 @anaconda
Update 3.44.0-7.el7_7.x86_64 @updates
Updated nss-tools-3.44.0-4.el7.x86_64 @anaconda
Update 3.44.0-7.el7_7.x86_64 @updates
Updated nss-util-3.44.0-3.el7.x86_64 @anaconda
Update 3.44.0-4.el7_7.x86_64 @updates
Updated numactl-libs-2.0.12-3.el7.x86_64 @anaconda
Update 2.0.12-3.el7_7.1.x86_64 @updates
Updated pgdg-redhat-repo-42.0-5.noarch @/pgdg-centos10-10-2.noarch
Update 42.0-6.noarch @pgdg10
Updated php-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-cli-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-common-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-gd-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-json-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-ldap-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-mysqlnd-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-odbc-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-pdo-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
** Updated php-pear-1:1.10.10-2.el7.remi.noarch @remi-php70
** Update 1:1.10.10-4.el7.remi.noarch @?remi-php73
Updated php-pgsql-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-process-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-xml-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated php-xmlrpc-7.3.12-1.el7.remi.x86_64 @remi-php73
Update 7.3.13-1.el7.remi.x86_64 @remi-php73
Updated postgresql10-10.11-1PGDG.rhel7.x86_64 @pgdg10
Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
Updated postgresql10-contrib-10.11-1PGDG.rhel7.x86_64 @pgdg10
Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
Updated postgresql10-libs-10.11-1PGDG.rhel7.x86_64 @pgdg10
Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
** Updated postgresql10-server-10.11-1PGDG.rhel7.x86_64 @pgdg10
Update 10.11-2PGDG.rhel7.x86_64 @pgdg10
** Updated proftpd-1.3.5e-7.el7.x86_64 @epel
Update 1.3.5e-8.el7.x86_64 @epel
Updated python-perf-3.10.0-1062.4.3.el7.x86_64 @updates
Update 3.10.0-1062.9.1.el7.x86_64 @updates
Updated python-requests-2.6.0-7.el7_7.noarch @updates
Update 2.6.0-8.el7_7.noarch @updates
Updated python2-acme-0.39.0-1.el7.noarch @epel
Update 1.0.0-1.el7.noarch @epel
Updated python2-certbot-0.39.0-1.el7.noarch @epel
Update 1.0.0-1.el7.noarch @epel
Updated python2-certbot-apache-0.39.0-1.el7.noarch @epel
Update 1.0.0-1.el7.noarch @epel
Updated selinux-policy-3.13.1-252.el7.1.noarch @updates
Update 3.13.1-252.el7_7.6.noarch @updates
Updated selinux-policy-targeted-3.13.1-252.el7.1.noarch @updates
Update 3.13.1-252.el7_7.6.noarch @updates
Updated sos-3.7-7.el7.centos.noarch @updates
Update 3.7-10.el7.centos.noarch @updates
** Updated sssd-client-1.16.4-21.el7.x86_64 @anaconda
Update 1.16.4-21.el7_7.1.x86_64 @updates
Updated tcpdump-14:4.9.2-4.el7.x86_64 @anaconda
Update 14:4.9.2-4.el7_7.1.x86_64 @updates
Updated util-linux-2.23.2-61.el7.x86_64 @anaconda
Update 2.23.2-61.el7_7.1.x86_64 @updates
Scriptlet output:
1 error: Couldn't fork %post(libsss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory
2 error: Couldn't fork %post(libsss_nss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory
3 error: Couldn't fork %pre(ca-certificates-2019.2.32-76.el7_7.noarch): Cannot allocate memory
4 error: ca-certificates-2019.2.32-76.el7_7.noarch: install failed
5 error: Couldn't fork %post(certbot-1.0.0-1.el7.noarch): Cannot allocate memory
6 error: Couldn't fork %pre(MariaDB-server-10.4.11-1.el7.centos.x86_64): Cannot allocate memory
7 error: MariaDB-server-10.4.11-1.el7.centos.x86_64: install failed
8 error: Couldn't fork %post(sssd-client-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory
9 error: Couldn't fork %post(kernel-tools-3.10.0-1062.9.1.el7.x86_64): Cannot allocate memory
10 error: Couldn't fork %pre(php-pear-1:1.10.10-4.el7.remi.noarch): Cannot allocate memory
11 error: php-pear-1:1.10.10-4.el7.remi.noarch: install failed
12 warning: /etc/clamd.d/scan.conf created as /etc/clamd.d/scan.conf.rpmnew
13 error: Couldn't fork %triggerin(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate memory
14 error: php-pear-1:1.10.10-2.el7.remi.noarch: erase skipped
15 error: MariaDB-server-10.4.10-1.el7.centos.x86_64: erase skipped
16 error: Couldn't fork %preun(MariaDB-shared-10.4.10-1.el7.centos.x86_64): Cannot allocate memory
17 error: MariaDB-shared-10.4.10-1.el7.centos.x86_64: erase failed
18 error: Couldn't fork %postun(MariaDB-compat-10.4.10-1.el7.centos.x86_64): Cannot allocate memory
19 error: ca-certificates-2018.2.22-70.0.el7_5.noarch: erase skipped
20 error: Couldn't fork %preun(microcode_ctl-2:2.1-53.3.el7_7.x86_64): Cannot allocate memory
21 error: microcode_ctl-2:2.1-53.3.el7_7.x86_64: erase failed
22 error: Couldn't fork %preun(postgresql10-server-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory
23 error: postgresql10-server-10.11-1PGDG.rhel7.x86_64: erase failed
24 error: Couldn't fork %postun(libmount-2.23.2-61.el7.x86_64): Cannot allocate memory
25 error: Couldn't fork %preun(sssd-client-1.16.4-21.el7.x86_64): Cannot allocate memory
26 error: sssd-client-1.16.4-21.el7.x86_64: erase failed
27 error: Couldn't fork %postun(libblkid-2.23.2-61.el7.x86_64): Cannot allocate memory
28 error: Couldn't fork %postun(postgresql10-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory
29 error: Couldn't fork %postun(clamav-lib-0.101.4-1.el7.x86_64): Cannot allocate memory
30 error: Couldn't fork %postun(kernel-tools-3.10.0-1062.4.3.el7.x86_64): Cannot allocate memory
31 error: Couldn't fork %postun(libcurl-7.29.0-54.el7.x86_64): Cannot allocate memory
32 error: Couldn't fork %postun(nss-3.44.0-4.el7.x86_64): Cannot allocate memory
33 error: Couldn't fork %postun(nss-softokn-3.44.0-5.el7.x86_64): Cannot allocate memory
34 error: Couldn't fork %postun(nss-util-3.44.0-3.el7.x86_64): Cannot allocate memory
35 error: Couldn't fork %postun(postgresql10-libs-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory
36 error: Couldn't fork %postun(libuuid-2.23.2-61.el7.x86_64): Cannot allocate memory
37 error: Couldn't fork %postun(libsss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory
38 error: Couldn't fork %postun(libsss_nss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory
39 error: Couldn't fork %postun(libsmartcols-2.23.2-61.el7.x86_64): Cannot allocate memory
40 error: Couldn't fork %postun(libwebp7-1.0.2-1.el7.remi.x86_64): Cannot allocate memory
41 error: Couldn't fork %postun(fribidi-1.0.2-1.el7.x86_64): Cannot allocate memory
42 error: Couldn't fork %preun(proftpd-1.3.5e-7.el7.x86_64): Cannot allocate memory
43 error: proftpd-1.3.5e-7.el7.x86_64: erase failed
44 error: Couldn't fork %postun(numactl-libs-2.0.12-3.el7.x86_64): Cannot allocate memory
45 error: Couldn't fork %posttrans(kernel-3.10.0-1062.9.1.el7.x86_64): Cannot allocate memory
46 error: Couldn't fork %posttrans(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate memory
history info
[root@vps2 ~]#
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