I got try to split the sequence one by one and that run each of them to the fgenesh and append all the output result in one file at the end.
Although it can archieve my desired output, it seem like ineffective for long term :(
Hope can get all of your advice to give me some hit to write a script that allow fgenesh to run multi-fasta sequence.
Thanks a lot for all advice and suggestion.
best regards
Patrick
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