On Wed, 27 Aug 2014 05:05:11 -0400 "Bob Goodwin - Zuni, Virginia, USA" <bobgoodwin@xxxxxxxxxxxx> wrote: > > On 08/27/14 03:51, Ian Malone wrote: > > On 26 August 2014 20:59, Bob Goodwin - Zuni, Virginia, USA > > <bobgoodwin@xxxxxxxxxxxx> wrote: > >> > > >> > Is there a Linux application that will display a dicom image file? > >> > > >> > Bob > >> > > > Yes, though there are more that will display other formats that you > > can generate from DICOM. Many DICOM files are single slices/images of > > a series. Others are > > MRIcronhttp://www.mccauslandcenter.sc.edu/mricro/mricron/ > > - includes viewer for NIfTI files (.nii/.nii.gz) and converter > > dcm2nii. For most uses I'd give it arguments of -r n -x n along with > > whatever naming arguments are needed. N.B. slightly odd usage in that > > all -? arguments must come before the directory to be converted. > > > > MCverterhttp://lcni.uoregon.edu/~jolinda/MRIConvert/ another > > converter application > > > > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Licence Includes the viewer > > FSLview which will read NIfTI. Lots of other neuroimaging tools > > included. Not Open Source, but source provided and free for > > non-commercial use. > > > > http://imagej.nih.gov/ij/ Java based viewer, plugin based. Not great > > for neuroimaging, but will load NIfTI and I think there are DICOM > > plugins too. > > > > http://www.brain.org.au/software/mrtrix/ MRtrix, aimed at diffusion > > imaging, but includes DICOM converter and viewer. > > > > There's also SPM, but only if you have access to Matlab. > > Thanks to all who responded to my query. I probably should have looked > harder before asking but the responses are all helpful. > > I yum installed "aeskulap" which works but it's operation does not seem > very intuitive to me. I have had more success displaying the images > after copying just the image files from the disc to my nfs server. > > These are images of a heart catheterization I had done several weeks ago > and display as video clips showing the injection of the radio opaque dye > to outline the blood vessels, everything is moving as the heart beats, > surprising detail, interesting to see ... Just received the disk > yesterday and I need to play with it some more, perhaps try another > viewer? This is a new thing for me and will take some time. > > And yes, they did include a Windows viewer and I have a Windows VM > somewhere but prefer not to mess with that if there is an Linux alternative. > > Tnx, > > Bob Btw, R has a package called fmri which allows one to read in DICOM files. Though I am not very clear if the goal is to watch a video or to analyze the data. If the second, then R will be useful. Many thanks. Ranjan ____________________________________________________________ FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! Check it out at http://www.inbox.com/earth -- users mailing list users@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe or change subscription options: https://admin.fedoraproject.org/mailman/listinfo/users Fedora Code of Conduct: http://fedoraproject.org/code-of-conduct Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines Have a question? Ask away: http://ask.fedoraproject.org
