刘定干 <dgliu@xxxxxxxxxxx> writes: > Dear friends: As a novice, I want to use Fedora to do analysis of > RNA-seq results by using TopHat and Cufflinks softwares. cufflinks appears to be non-free, in which case it can't go into Fedora, though there doesn't seem to have been a ruling from fedora-legal on it. > What kind of Fedora linux software should I download? Please give me some advice! Sorry, I don't have time to explain what to do with this, but maybe someone else can: You should be able to rebuild the tophat rpm under <http://copr.fedoraproject.org/coprs/loveshack/livhpc/> on anything RHEL6-compatible or above, but on EL6 it needs an updated boost, e.g. from that repo. I'll try to start a fedora20 build anyhow. A cufflinks rpm can be built from <http://arc.liv.ac.uk/downloads/misc/SPECS/cufflinks.spec>. The current bowtie is in the same places. _______________________________________________ scitech mailing list scitech@xxxxxxxxxxxxxxxxxxxxxxx https://admin.fedoraproject.org/mailman/listinfo/scitech
