Hi,
I am trying to get a command line tool to run under wine,
and have varied success. The command msconvert.exe is part
of the mixed open/closed source Proteowizard project [1],
which provides a unified access to the mass spectrometry data
from any instrument vendor through their closed source
data access DLLs. In particular, msconvert converts into
vendor-neutral open XML formats. Download available from [2].
If people here think this should be filed in bugzilla,
I'd be happy to do so.
So success or failure running msconvert depends on which and how
these DLLs are written and called, which I have no direct control of.
* I can run msconvert just fine when converting from one open format
to another, which does not require any closed DLLs.
So msconvert itself is fine.
* I have one instrument that has a mix of *.dll that are
identified as "PE32 executable (DLL)" for console and GUI,
and also include Mono/.Net assemblies. Runs fine.
* I have data and DLLs from a different instrument,
where at runtime a few err:ole messages are suspicious
to my (wine-untrained) eye, see also full trace below:
err:ole:marshal_object Failed to create an IRpcStubBuffer from IPSFactory for {00000126-0000-0000-c000-000000000046} with error 0x80004002
err:ole:ClientIdentity_QueryMultipleInterfaces IRemUnknown_RemQueryInterface failed with error 0x80004002
A few output lines later the process just hangs, it can be
terminated with ^C.
I am running Ubuntu 16.04, and previously 14.04, and I have tried
Wine Staging 1.9.15, wine-1.6.2 and wine-1.8.0. Needless to say,
works under Windows. The msconvert sources are living under [3].
I tried a "normal" wineprefix and WINEARCH=win32 wineprefix.
Dependencies I know of are installed via a recent winetricks:
./winetricks --unattended msxml3 mfc42 corefonts
./winetricks --unattended vcrun2005
./winetricks --unattended vcrun2008
./winetricks --unattended vcrun2010
./winetricks --unattended dotnet35sp1
./winetricks --unattended dotnet40
All my attempts so far were quite random, following
https://www.winehq.org/docs/wineusr-guide/bugs
Thanks in advance,
yours,
Steffen
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[1] http://proteowizard.sourceforge.net/
[2] http://proteowizard.sourceforge.net/downloads.shtml
[3] https://sourceforge.net/p/proteowizard/code/HEAD/tree/trunk/pwiz/
---------------------------------------------------------------------------
WINEDEBUG=-all,+loaddll,err+all,fixme+all wine ./msconvert.exe /tmp/pwiz/thermo.raw
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\wineboot.exe" at 0x7efe0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7eb50000: builtin
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\winemenubuilder.exe" at 0x7efe0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7e980000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\gdi32.dll" at 0x7e710000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\version.dll" at 0x7e6f0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\user32.dll" at 0x7e830000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7e680000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ole32.dll" at 0x7ea00000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\oleaut32.dll" at 0x7e550000: builtin
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shlwapi.dll" at 0x7e4d0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\windowscodecs.dll" at 0x7eb30000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shell32.dll" at 0x7e2a0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\services.exe" at 0x7eba0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7eab0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7eb20000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\userenv.dll" at 0x7eff0000: builtin
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\windows\\Microsoft.NET\\Framework\\v4.0.30319\\mscorsvw.exe" at 0x10000000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\system32\\MSVCR100_CLR0400.dll" at 0x79060000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7eb50000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\gdi32.dll" at 0x7e8f0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\version.dll" at 0x7eff0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\user32.dll" at 0x7ea10000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\windows\\system32\\mscoree.dll" at 0x79000000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7e730000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ole32.dll" at 0x7e7c0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\oleaut32.dll" at 0x7e610000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\imm32.dll" at 0x7dfc0000: builtin
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\explorer.exe" at 0x7eb90000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7eaa0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7eb20000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\gdi32.dll" at 0x7e840000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\version.dll" at 0x7eff0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\user32.dll" at 0x7e960000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\imm32.dll" at 0x7e340000: builtin
fixme:heap:RtlSetHeapInformation (nil) 1 (nil) 0 stub
fixme:process:SetProcessDEPPolicy (1): stub
fixme:heap:RtlSetHeapInformation (nil) 1 (nil) 0 stub
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\winedevice.exe" at 0x7eff0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7eb60000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ntoskrnl.exe" at 0x7eb10000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7ea90000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\mountmgr.sys" at 0x7ea70000: builtin
trace:loaddll:load_builtin_dll Loaded L"KERNEL32.dll" at 0x7b810000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\plugplay.exe" at 0x7eff0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7eb60000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7eae0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\gdi32.dll" at 0x7e640000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\version.dll" at 0x7e610000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\user32.dll" at 0x7e760000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shlwapi.dll" at 0x7e8a0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shell32.dll" at 0x7e920000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\gdi32.dll" at 0x7e1a0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\version.dll" at 0x7ea60000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\user32.dll" at 0x7e2c0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\imm32.dll" at 0x7e570000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\winex11.drv" at 0x7e4f0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shlwapi.dll" at 0x7e010000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shell32.dll" at 0x7e090000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ole32.dll" at 0x7dee0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\oleaut32.dll" at 0x7dab0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\actxprxy.dll" at 0x7dbf0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\winex11.drv" at 0x7df40000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\imm32.dll" at 0x7e350000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7e1a0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ole32.dll" at 0x7e220000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\msconvert.exe" at 0x400000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\advapi32.dll" at 0x7ea30000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\gdi32.dll" at 0x7e7d0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\version.dll" at 0x7eff0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\user32.dll" at 0x7e8f0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\rpcrt4.dll" at 0x7e750000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ole32.dll" at 0x7eab0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\oleaut32.dll" at 0x7e620000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shlwapi.dll" at 0x7e370000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\shell32.dll" at 0x7e3e0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\msvcr110.dll" at 0x7e1a0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\msvcp110.dll" at 0x7e290000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\vcomp110.dll" at 0x7e170000: builtin
trace:loaddll:free_modref Unloaded module L"C:\\windows\\system32\\vcomp110.dll" : builtin
trace:loaddll:load_native_dll Loaded L"C:\\windows\\system32\\VCOMP110.DLL" at 0x340000: native
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\baf2sql_c.dll" at 0x10000000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\msvcr120.dll" at 0x7dfc0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\msvcp120.dll" at 0x7e0b0000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\cdt.dll" at 0x360000: native
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\MassLynxRaw.dll" at 0x390000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\ws2_32.dll" at 0x7df70000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\jsproxy.dll" at 0x7df10000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\winhttp.dll" at 0x7df30000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\msparser.dll" at 0x65000000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\system32\\mscoree.dll" at 0x79000000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\imm32.dll" at 0x7dfa0000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\imm32.dll" at 0x7dc10000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\windows\\Microsoft.NET\\Framework\\v4.0.30319\\mscoreei.dll" at 0x603b0000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\system32\\MSVCR100_CLR0400.dll" at 0x79060000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\Microsoft.NET\\Framework\\v4.0.30319\\clr.dll" at 0x79140000: native
fixme:thread:SetThreadStackGuarantee (0x33fbe4): stub
trace:loaddll:load_native_dll Loaded L"C:\\windows\\Microsoft.NET\\Framework\\v4.0.30319\\clrjit.dll" at 0x79810000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\Microsoft.NET\\Framework\\v4.0.30319\\culture.dll" at 0x60340000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\Microsoft.NET\\Framework\\v4.0.30319\\nlssorting.dll" at 0x60930000: native
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33e790 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33e2a8 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33dd64 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33ddf4 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33dc34 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33eebc 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33ee64 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33e668 1 C) semi-stub
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33e4a8 1 C) semi-stub
format: mzML
m/z: Compression-None, 64-bit
intensity: Compression-None, 32-bit
rt: Compression-None, 64-bit
ByteOrder_LittleEndian
indexed="true"
outputPath: .
extension: .mzML
contactFilename:
filters:
filenames:
/tmp/thermo.raw
processing file: /tmp/thermo.raw
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33eb18 1 C) semi-stub
err:ole:CoInitializeEx Attempt to change threading model of this apartment from multi-threaded to apartment threaded
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\winex11.drv" at 0x7da80000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\windows\\winsxs\\x86_Microsoft.VC90.CRT_1fc8b3b9a1e18e3b_9.0.30729.1_x-ww_6f74963e\\MSVCR90.dll" at 0x78520000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\comctl32.dll" at 0x7d760000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\msimg32.dll" at 0x7d740000: builtin
trace:loaddll:load_native_dll Loaded L"C:\\windows\\winsxs\\x86_Microsoft.VC90.MFC_1fc8b3b9a1e18e3b_9.0.30729.1_x-ww_405b0943\\mfc90u.dll" at 0x789e0000: native
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\fregistry.dll" at 0x44f0000: native
trace:loaddll:load_native_dll Loaded L"C:\\windows\\winsxs\\x86_Microsoft.VC90.CRT_1fc8b3b9a1e18e3b_9.0.30729.1_x-ww_6f74963e\\MSVCP90.dll" at 0x78480000: native
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\fileio.dll" at 0x4380000: native
trace:loaddll:load_native_dll Loaded L"C:\\Program Files\\ProteoWizard\\ProteoWizard 3.0.9870\\MSFileReader.XRawfile2.dll" at 0x4340000: native
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\uxtheme.dll" at 0x7d710000: builtin
trace:loaddll:load_builtin_dll Loaded L"C:\\windows\\system32\\dwmapi.dll" at 0x7d6f0000: builtin
fixme:appbar:handle_appbarmessage SHAppBarMessage(ABM_GETAUTOHIDEBAR, hwnd=(nil), edge=3): stub
fixme:appbar:handle_appbarmessage SHAppBarMessage(ABM_GETAUTOHIDEBAR, hwnd=(nil), edge=1): stub
fixme:appbar:handle_appbarmessage SHAppBarMessage(ABM_GETAUTOHIDEBAR, hwnd=(nil), edge=0): stub
fixme:appbar:handle_appbarmessage SHAppBarMessage(ABM_GETAUTOHIDEBAR, hwnd=(nil), edge=2): stub
err:ole:marshal_object Failed to create an IRpcStubBuffer from IPSFactory for {00000126-0000-0000-c000-000000000046} with error 0x80004002
err:ole:ClientIdentity_QueryMultipleInterfaces IRemUnknown_RemQueryInterface failed with error 0x80004002
fixme:ntdll:NtLockFile I/O completion on lock not implemented yet
fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (0x33e674 1 C) semi-stub
writing output file: .\thermo.mzML
err:ole:ClientRpcChannelBuffer_SendReceive called from wrong apartment, should have been 0x80000cafe
err:ole:xCall RpcChannelBuffer SendReceive failed, 8001010e
[SpectrumWorkerThreads::work] error in thread: [SpectrumList_Thermo::spectrum()] Error setting controller to: 0,1 ([ThermoRawFile] [RawFileImpl::setCurrentController()] Failed call to XRawfile: Unknown error 0x8001010E)
err:ole:ClientRpcChannelBuffer_SendReceive called from wrong apartment, should have been 0x80000cafe
err:ole:xCall RpcChannelBuffer SendReceive failed, 8001010e
[SpectrumWorkerThreads::work] error in thread: [SpectrumList_Thermo::spectrum()] Error setting controller to: 0,1 ([ThermoRawFile] [RawFileImpl::setCurrentController()] Failed call to XRawfile: Unknown error 0x8001010E)
err:ole:ClientRpcChannelBuffer_SendReceive called from wrong apartment, should have been 0x80000cafe
err:ole:xCall RpcChannelBuffer SendReceive failed, 8001010e
[SpectrumWorkerThreads::work] error in thread: [SpectrumList_Thermo::spectrum()] Error setting controller to: 0,1 ([ThermoRawFile] [RawFileImpl::setCurrentController()] Failed call to XRawfile: Unknown error 0x8001010E)
err:ole:ClientRpcChannelBuffer_SendReceive called from wrong apartment, should have been 0x80000cafe
err:ole:xCall RpcChannelBuffer SendReceive failed, 8001010e
[SpectrumWorkerThreads::work] error in thread: [SpectrumList_Thermo::spectrum()] Error setting controller to: 0,1 ([ThermoRawFile] [RawFileImpl::setCurrentController()] Failed call to XRawfile: Unknown error 0x8001010E)
---------------------------------------------------------------------------
--
IPB Halle AG Massenspektrometrie & Bioinformatik
Dr. Steffen Neumann http://www.IPB-Halle.DE
Weinberg 3 Tel. +49 (0) 345 5582 - 1470
06120 Halle +49 (0) 345 5582 - 0
sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409
