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Upload issue with squid 3.5.5

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I have a number of machines running BOINC which are having issues uploading with one particular project (climateprediction.net) however if I redirect the client to a Squid 2.7 server they work fine. It doesn't do it every time, some files work just fine. They are usually 15Mb or 47Mb uploads.

Below is the http debug messages from a BOINC client indicating it can't understand the encoding after its made initial contact. This was taken when talking to Squid 3.5.5 (Win Server 2008).

Cheers,
MarkJ


09-06-2015 11:45 PM Started upload of hadam3p_anz_n9oe_2007_1_009869130_0_12.zip 
09-06-2015 11:45 PM [http] [ID#82] Info:  timeout on name lookup is not supported 
09-06-2015 11:45 PM [http] [ID#82] Info:  Hostname was found in DNS cache 
09-06-2015 11:45 PM [http] [ID#82] Info:    Trying 192.168.0.*... 
09-06-2015 11:45 PM [http] [ID#82] Info:  Connected to abc123 (192.168.0.*) port 3128 (#132) 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: POST http://cpdn-upload4.oerc.ox.ac.uk/cgi-bin/file_upload_handler HTTP/1.0
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: User-Agent: BOINC client (windows_x86_64 7.6.2)
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Host: cpdn-upload4.oerc.ox.ac.uk
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Accept: */*
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Accept-Encoding: deflate, gzip
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Proxy-Connection: Keep-Alive
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Content-Type: application/x-www-form-urlencoded
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Accept-Language: en_AU
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: Content-Length: 294
 
09-06-2015 11:45 PM [http] [ID#82] Sent header to server: 
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: HTTP/1.1 200 OK
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Date: Tue, 09 Jun 2015 13:45:10 GMT
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Server: Apache/2.4.7 (Ubuntu)
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Vary: Accept-Encoding
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Content-Encoding: gzip
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Content-Length: 75
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Content-Type: text/plain
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: X-Cache: MISS from abc123
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Via: 1.1 abc123 (squid/3.5.5)
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: Connection: keep-alive
 
09-06-2015 11:45 PM [http] [ID#82] Received header from server: 
 
09-06-2015 11:45 PM [http] [ID#82] Info:  Error while processing content unencoding: invalid block type 
09-06-2015 11:45 PM [http] [ID#82] Info:  Closing connection 132 
09-06-2015 11:45 PM [http] HTTP error: Unrecognized or bad HTTP Content or Transfer-Encoding *
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