Array 'freezes' for some time after large writes?

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Hi all.  Regularly after a large write to the disk (untarring a very
large file, etc), my RAID5 will 'freeze' for a period of time --
perhaps around a minute.  My system is completely responsive otherwise
during this time, with the exception of anything that is attempting to
read or write from the array -- it's as if any file descriptors simply
block.  Nothing disk/raid-related is written to the logs during this
time.  The array is mounted as /home -- so an awful lot of things
completely freeze during this time (web browser, any video that is
running, etc).  The disks don't seem to be actually accessed during
this time (I can't hear them, and the disk access light stays off),
and it's not as if it's just reading slowly -- it's not reading at
all.   Array performance is completely normal before and after the
freeze and simply non-existent during it.  The root disk (which is on
a seperate disk entirely from the RAID) runs fine during this time, as
does everything else (network, video card, etc -- as long it doesn't
touch the array) -- for example, a Terminal window open is still
responsive during the freeze, and 'ls /' would work fine, while 'ls
/home' would block until the 'freeze' is over.

Some more detailed information on my setup attached.  It's pretty
vanilla.  Unfortunately this started around the time four things
happened -- a kernel upgrade to 2.6.32, upgrading my filesystems to
ext4, replacing a disk gone bad in the RAID, and a video card change.
I would assume one of these is the culprit, but you know what they say
about 'assume'.  I cannot reproduce the problem reliably, but it
happens a couple times a day.  My questions are these:

1. Is there any way to turn on more detailed logging for the RAID
system in the kernel?  The wiki or a google search makes no mention I
can find, and mdadm doesn't put anything out during this time.
2. Possibly a problem with the SATA system?  My root drive is PATA --
my RAID disks are all SATA.
2. Uh, any other ideas? :)


Thanks, all.

Jim Duchek





[jrduchek@jimbob ~]$ uname -a
Linux jimbob 2.6.32-ARCH #1 SMP PREEMPT Mon Mar 15 20:44:03 CET 2010
x86_64 Intel(R) Core(TM)2 Quad CPU Q8400 @ 2.66GHz GenuineIntel
GNU/Linux

[jrduchek@jimbob ~]$ cat /proc/mdstat
Personalities : [raid6] [raid5] [raid4]
md0 : active raid5 sdb1[0] sde1[3] sdd1[2] sdc1[1]
      1465151808 blocks level 5, 64k chunk, algorithm 2 [4/4] [UUUU]

unused devices: <none>


[jrduchek@jimbob ~]$ mount
/dev/sda3 on / type ext4 (rw,noatime,user_xattr)
udev on /dev type tmpfs (rw,nosuid,relatime,size=10240k,mode=755)
none on /proc type proc (rw,relatime)
none on /sys type sysfs (rw,relatime)
none on /dev/pts type devpts (rw)
none on /dev/shm type tmpfs (rw)
/dev/sda1 on /boot type ext2 (rw)
/dev/md0 on /home type ext4 (rw,noatime,user_xattr)

[jrduchek@jimbob ~]$ more /etc/rc.local
#!/bin/bash
#
# /etc/rc.local: Local multi-user startup script.
#

echo 8192 > /sys/block/md0/md/stripe_cache_size
blockdev --setra 32768 /dev/md0
blockdev --setfra 32768 /dev/md0



dmesg (relevant):




ata3: SATA max UDMA/133 cmd 0xc400 ctl 0xc080 bmdma 0xb880 irq 19
ata4: SATA max UDMA/133 cmd 0xc000 ctl 0xbc00 bmdma 0xb888 irq 19
ata3.00: ATA-7: WDC WD5000AAJS-22TKA0, 12.01C01, max UDMA/133
ata3.00: 976773168 sectors, multi 16: LBA48 NCQ (depth 0/32)
ata3.01: ATA-8: WDC WD5002ABYS-02B1B0, 02.03B03, max UDMA/133
ata3.01: 976773168 sectors, multi 16: LBA48 NCQ (depth 0/32)
ata3.00: configured for UDMA/133
ata3.01: configured for UDMA/133
ata4.00: ATA-7: WDC WD5000AAJS-22TKA0, 12.01C01, max UDMA/133
ata4.00: 976773168 sectors, multi 16: LBA48 NCQ (depth 0/32)
ata4.01: ATA-7: WDC WD5000AAJS-22TKA0, 12.01C01, max UDMA/133
ata4.01: 976773168 sectors, multi 16: LBA48 NCQ (depth 0/32)
ata4.00: configured for UDMA/133
ata4.01: configured for UDMA/133
ata1.00: ATA-7: MAXTOR STM3160815A, 3.AAD, max UDMA/100
ata1.00: 312581808 sectors, multi 16: LBA48
ata1.01: ATAPI: LITE-ON DVDRW LH-20A1P, KL0G, max UDMA/66
ata1.00: configured for UDMA/100
ata1.01: configured for UDMA/66
scsi 0:0:0:0: Direct-Access     ATA      MAXTOR STM316081 3.AA PQ: 0 ANSI: 5
scsi 0:0:1:0: CD-ROM            LITE-ON  DVDRW LH-20A1P   KL0G PQ: 0 ANSI: 5
scsi 2:0:0:0: Direct-Access     ATA      WDC WD5000AAJS-2 12.0 PQ: 0 ANSI: 5
scsi 2:0:1:0: Direct-Access     ATA      WDC WD5002ABYS-0 02.0 PQ: 0 ANSI: 5
scsi 3:0:0:0: Direct-Access     ATA      WDC WD5000AAJS-2 12.0 PQ: 0 ANSI: 5
scsi 3:0:1:0: Direct-Access     ATA      WDC WD5000AAJS-2 12.0 PQ: 0 ANSI: 5
sd 2:0:0:0: [sdb] 976773168 512-byte logical blocks: (500 GB/465 GiB)
sd 2:0:1:0: [sdc] 976773168 512-byte logical blocks: (500 GB/465 GiB)
sd 0:0:0:0: [sda] 312581808 512-byte logical blocks: (160 GB/149 GiB)
sd 3:0:0:0: [sdd] 976773168 512-byte logical blocks: (500 GB/465 GiB)
sd 0:0:0:0: [sda] Write Protect is off
sd 0:0:0:0: [sda] Mode Sense: 00 3a 00 00
sd 0:0:0:0: [sda] Write cache: enabled, read cache: enabled, doesn't
support DPO or FUA
sd 3:0:0:0: [sdd] Write Protect is off
sd 3:0:0:0: [sdd] Mode Sense: 00 3a 00 00
sd 3:0:0:0: [sdd] Write cache: enabled, read cache: enabled, doesn't
support DPO or FUA
sd 2:0:0:0: [sdb] Write Protect is off
sd 2:0:0:0: [sdb] Mode Sense: 00 3a 00 00
sd 2:0:0:0: [sdb] Write cache: enabled, read cache: enabled, doesn't
support DPO or FUA
 sdd:
 sda:
 sdb:
sd 2:0:1:0: [sdc] Write Protect is off
sd 2:0:1:0: [sdc] Mode Sense: 00 3a 00 00
sd 2:0:1:0: [sdc] Write cache: enabled, read cache: enabled, doesn't
support DPO or FUA
 sdc: sdb1
 sdd1
sd 3:0:0:0: [sdd] Attached SCSI disk
sd 3:0:1:0: [sde] 976773168 512-byte logical blocks: (500 GB/465 GiB)
sd 3:0:1:0: [sde] Write Protect is off
sd 3:0:1:0: [sde] Mode Sense: 00 3a 00 00
sd 3:0:1:0: [sde] Write cache: enabled, read cache: enabled, doesn't
support DPO or FUA
 sde: sde1
sd 3:0:1:0: [sde] Attached SCSI disk
 sda1 sda2 sda3
 sdc1
sd 0:0:0:0: [sda] Attached SCSI disk

sd 2:0:0:0: [sdb] Attached SCSI disk
sd 2:0:1:0: [sdc] Attached SCSI disk

md: md0 stopped.
md: bind<sdc1>
md: bind<sdd1>
md: bind<sde1>
md: bind<sdb1>
async_tx: api initialized (async)
xor: automatically using best checksumming function: generic_sse
   generic_sse:  7597.200 MB/sec
xor: using function: generic_sse (7597.200 MB/sec)
raid6: int64x1   1567 MB/s
raid6: int64x2   1994 MB/s
raid6: int64x4   1582 MB/s
raid6: int64x8   1427 MB/s
raid6: sse2x1    3698 MB/s
raid6: sse2x2    4184 MB/s
raid6: sse2x4    5888 MB/s
raid6: using algorithm sse2x4 (5888 MB/s)
md: raid6 personality registered for level 6
md: raid5 personality registered for level 5
md: raid4 personality registered for level 4
raid5: device sdb1 operational as raid disk 0
raid5: device sde1 operational as raid disk 3
raid5: device sdd1 operational as raid disk 2
raid5: device sdc1 operational as raid disk 1
raid5: allocated 4272kB for md0
0: w=1 pa=0 pr=4 m=1 a=2 r=4 op1=0 op2=0
3: w=2 pa=0 pr=4 m=1 a=2 r=4 op1=0 op2=0
2: w=3 pa=0 pr=4 m=1 a=2 r=4 op1=0 op2=0
1: w=4 pa=0 pr=4 m=1 a=2 r=4 op1=0 op2=0
raid5: raid level 5 set md0 active with 4 out of 4 devices, algorithm 2
RAID5 conf printout:
 --- rd:4 wd:4
 disk 0, o:1, dev:sdb1
 disk 1, o:1, dev:sdc1
 disk 2, o:1, dev:sdd1
 disk 3, o:1, dev:sde1
md0: detected capacity change from 0 to 1500315451392
 md0: unknown partition table
EXT4-fs (md0): mounted filesystem with ordered data mode
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