mysql problems

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I'm running PHP 5.3.6, Mysql 5.1.51 and Apache 2.2.17

I have
code that does a simple mysql_query();  the query on the commandline
returns an empty set.  when run via PHP and the web server, the page
hangs, it never gets to the if (mysql_num_rows($result) > 0) {}. and
the queries per second on mysql goes from roughly 4 per second to about
12,000.

Does anyone have any ideas?

Thanks,
Curtis

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