Question on code profiling

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I'm trying to profile a site on our development server to see why it
takes around 4 seconds to generate a pretty basic page. I installed
xdebug to use for the profiling, and now I'm really confused. Even
though it takes around 4 seconds to build the entire page, the profile
says that the total processing time is around 416ms. I thought it
might be calls to require_once/include/include_once. While they are
significant (around 46%), it says they only account for 193ms. What
could account for that much difference between what xdebug calculates
versus the total elapsed time?

Andrew

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