in_array and annidated path

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Hi all sory for the double post but i have deleted the first email that i have send to the list.
The problem that i have found is that in_array function don't work with annidate path.
I have created a function that update a list of filepath from a directory to DB
but when i use particular path with space and more long like: C:\back\Microsoft.NET\Framework\v1.0.3705\file.exe
with more iteration there are problem because add the same file again.
Can you help me to fix the problem ? I have used this script
with CLI but to explain the problem i have added the source to this location:
http://www.fadelabot.net/update.php
Thanks so much to all and good work.
P.S: There is another problem about the CPU usage on windows Xp i have a process php.exe that use 99% of CPU.


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