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Restoring tables with circular references dumped to separate files

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I was dumping each table to a separate file so I could pick and choose when
restoring. However, seems this was not a great idea, since two of my tables
happened to reference each other via FOREIGN KEYs, and I am not able to
restore them. Is there a way to do this without manually merging the dump
files? Thanks for guidance in advance. 



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