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Re: High SYS CPU - need advise

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there is no big spike of queries that cause that, queries come in relatively stable pace. It's just when the higher rate of queries coming, the more likely this to happen.  yes, when stall happens , the active queries pile up - but that's the result of a stall (the server reacts slow on a keypress, not to mention queries execution), not the cause.


things to check:
*) blocked queries (pg_locks/pg_stat_activity)

nada
 
*) i/o wait. in particular, is linux page cache flushing.

no i/o wait, no IRQ (see below)
 
*) query stampede: we will want to measure TPS leading into the stall
and out of it.
*) anything else running on the box?

just bare linux + postgresql.
 
*) you have a large amount of table? maybe this statistics file related?

over 1000 tables across 4 or 5 schemas in a single database. 

*) let's log checkpoints to see if there is correlation with stall

checked, checkpoints happen must more rarely and w/o relation to a high-sys periods
 
*) nice to have vmstat/iostat during/before/after stall.  for example,
massive spike of context switches during stall could point to o/s
scheduler issue.


checked that as well - nothing. CS even lower.

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
          16.94    0.00    9.28    0.38    0.00   73.40

Device:            tps    kB_read/s    kB_wrtn/s    kB_read    kB_wrtn
sda               6.00        48.00         0.00         48          0

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
          18.06    0.00   18.43    0.25    0.00   63.26

Device:            tps    kB_read/s    kB_wrtn/s    kB_read    kB_wrtn
sda              10.00       104.00         0.00        104          0

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
           9.12    0.00   86.74    0.12    0.00    4.01

Device:            tps    kB_read/s    kB_wrtn/s    kB_read    kB_wrtn
sda               0.97         7.77         0.00          8          0

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
           1.44    0.00   96.58    0.00    0.00    1.98

Device:            tps    kB_read/s    kB_wrtn/s    kB_read    kB_wrtn
sda               3.28        78.69         0.00        144          0



procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu-----
 r  b   swpd   free   buff  cache   si   so    bi    bo   in   cs us sy id wa st
 1  0      0 279240  12016 14431964    0    0    32     0 197852 4299 15  9 76  0  0
 4  0      0 225984  12024 14419696    0    0     0    64 197711 5158 11  9 79  1  0
 0  0      0 260112  12024 14413636    0    0    48     0 196708 4618 17 10 73  0  0
 6  0      0 233936  12024 14375784    0    0   104     0 179861 4884 19 17 64  0  0
30  0      0 224904  12024 14354812    0    0     8     0 51088 1205  9 86  5  0  0
72  0      0 239144  12024 14333852    0    0   144     0 45601  542  2 98  0  0  0
78  0      0 224840  12024 14328536    0    0     0     0 38732  481  2 94  5  0  0
22  1      0 219072  12032 14250652    0    0   136   100 47323 1231  9 90  1  0  0








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