Re: High CPU Usage - PostgreSQL 7.3

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I should also explain that I run through these queries on multiple
tables and with some slightly different parameters for the
"consolidation" so I run through those 3 queries (or similar) 9 times
and this takes a total of about 2 hours, with high CPU usage.  And I
am running the queries from a remote Java application (using JDBC),
the client is using postgresql-8.0-311.jdbc3.jar.  The explain analyse
results I have provided below are from running via pgAdmin, not the
Java app (I did a vacuum analyse of the db before running them):


*** For the create ***:

-- Executing query:

BEGIN;
EXPLAIN ANALYZE CREATE TABLE fttemp1643 AS SELECT * FROM ftone LIMIT 0;
;
ROLLBACK;

ERROR:  parser: parse error at or near "CREATE" at character 25

Now that surprised me!  I hadn't done an explain on that query before
as it was so simple.  Perhaps not permitted for creates?  If I just
run the create:

-- Executing query:
CREATE TABLE fttemp1643 AS SELECT * FROM ftone LIMIT 0;


Query returned successfully with no result in 48 ms.



*** For the insert ***:

Subquery Scan "*SELECT*"  (cost=59690.11..62038.38 rows=23483
width=16) (actual time=16861.73..36473.12 rows=560094 loops=1)
 ->  Aggregate  (cost=59690.11..62038.38 rows=23483 width=16) (actual
time=16861.72..34243.63 rows=560094 loops=1)
       ->  Group  (cost=59690.11..61451.32 rows=234827 width=16)
(actual time=16861.62..20920.12 rows=709461 loops=1)
             ->  Sort  (cost=59690.11..60277.18 rows=234827 width=16)
(actual time=16861.62..18081.07 rows=709461 loops=1)
                   Sort Key: eppairdefnid, "start"
                   ->  Seq Scan on ftone  (cost=0.00..36446.66
rows=234827 width=16) (actual time=0.45..10320.91 rows=709461 loops=1)
                         Filter: ((consolidation = 60) AND ("start" <
(to_timestamp('2006-07-10 18:43:27.391103+1000'::text,
'YYYY-MM-DDHH24:00:00.0'::text))::timestamp without time zone))
Total runtime: 55378.68 msec


*** For the delete ***:

Hash Join  (cost=0.00..30020.31 rows=425 width=14) (actual
time=3767.47..3767.47 rows=0 loops=1)
 Hash Cond: ("outer".eppairdefnid = "inner".eppairdefnid)
 ->  Seq Scan on ftone  (cost=0.00..23583.33 rows=1286333 width=10)
(actual time=0.04..2299.94 rows=1286333 loops=1)
 ->  Hash  (cost=0.00..0.00 rows=1 width=4) (actual
time=206.01..206.01 rows=0 loops=1)
       ->  Seq Scan on fttemp1600384653  (cost=0.00..0.00 rows=1
width=4) (actual time=206.00..206.00 rows=0 loops=1)
Total runtime: 3767.52 msec


Thanks,
Neil

On 10/07/06, Neil Hepworth <nhepworth@xxxxxxxxx> wrote:
Thanks for the reply.

The database is vacuum analysed regularly and during my testing I
tried running the vacuum analyse full immediately before the running
through the set of queries (which does help a bit - reduces the time
to about 80% but is is still over an hour, with basically 100% CPU).

I'll get back to you with the full explain analyse output (I need to
re-create my test database back to its original state and that takes a
while) but I assume the part you're after is that all queries are
sequential scans, which I initially thought was the problem.  But it
is my understanding that I cannot make them index scans because a
large percentage of the table is being returned by the query
(typically 30%) so the planner will favour a sequential scan over an
index scan for such a query, correct?  If the queries had been disk
bound (due to retrieving large amounts of data) I would have
understood but I am confused as to why a sequential scan would cause
such high CPU and not high disk activity.

Yes, I wish I could upgrade to the latest version of PostgreSQL but at
the moment my hands are tied due to dependencies on other applications
running on our server (obviously we need to update certain queries,
e.g. delete .. using.. and test with 8.1 first) - I will be pushing
for an upgrade as soon as possible.  And the fsync=false is a
"compromise" to try to improve performance (moving to 8.1 would be
better compromise).

Neil


On 10/07/06, Jeff Frost <jeff@xxxxxxxxxxxxxxxxxxxxxx> wrote:
> On Mon, 10 Jul 2006, Neil Hepworth wrote:
>
> > I am running PostgreSQL 7.3 on a Linux box (RHEL 2.1 - Xeon 2.8GHz
> > with 1GB of RAM) and seeing very high CPU usage (normally over 90%)
> > when I am running the following queries, and the queries take a long
> > time to return; over an hour!
>
> First off, when is the last time you vacuum analyzed this DB and how often
> does the vacuum analyze happen.  Please post the EXPLAIN ANALYZE output for
> each of the queries below.
>
> Also, I would strongly urge you to upgrade to a more recent version of
> postgresql.  We're currently up to 8.1.4 and it has tons of excellent
> performance enhancements as well as helpful features such as integrated
> autovacuum, point in time recovery backups, etc.
>
> Also, I see that you're running with fsync = false.  That's quite dangerous
> especially on a production system.
>
>
> >
> > CREATE TEMPORARY TABLE fttemp1600384653 AS SELECT * FROM ftoneway LIMIT 0;
> >
> > INSERT INTO fttemp1600384653 SELECT epId, TO_TIMESTAMP(start,
> > 'YYYY-MM-DD HH24:00:00.0')::timestamp AS start, 60 AS consolidation,
> > SUM(cnt) AS cnt FROM ftone WHERE consolidation = 0 AND start <
> > TO_TIMESTAMP('2006-06-27 18:43:27.391103+1000', 'YYYY-MM-DD
> > HH24:00:00.0')::timestamp;
> >
> > DELETE FROM ONLY ftone WHERE ftoneway.epId= fttemp1600384653.epId;
> >
> > The only changes I've made to the default postgresql.comf file are listed
> > below:
> >
> > LC_MESSAGES = 'en_US'
> > LC_MONETARY = 'en_US'
> > LC_NUMERIC = 'en_US'
> > LC_TIME = 'en_US'
> > tcpip_socket = true
> > max_connections = 20
> > effective_cache_size = 32768
> > wal_buffers = 128
> > fsync = false
> > shared_buffers = 3000
> > max_fsm_relations = 10000
> > max_fsm_pages = 100000
> >
> > The tables are around a million rows but when when I run against
> > tables of a few hundred thousand rows it still takes tens of minutes
> > with high CPU.  My database does have a lot of tables (can be several
> > thousand), can that cause performance issues?
> >
> > Thanks,
> >   Neil
> >
> > ---------------------------(end of broadcast)---------------------------
> > TIP 3: Have you checked our extensive FAQ?
> >
> >              http://www.postgresql.org/docs/faq
> >
> >
>
> --
> Jeff Frost, Owner       <jeff@xxxxxxxxxxxxxxxxxxxxxx>
> Frost Consulting, LLC   http://www.frostconsultingllc.com/
> Phone: 650-780-7908     FAX: 650-649-1954
>



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