Hello Everybody,
Never mind, it seems like it resolved itself and it was a patience issue on my side. After 1 hour, the file became available.
Thank you for your time reading me.
Have a nice day,
Yannick Boursin
Chef de projets / DTNSI
IGH +10 / Bureau 605
Tel : 01 42 11 55 64
-----Message d'origine-----
De : BOURSIN YANNICK
Envoyé : vendredi 24 août 2018 16:39
À : 'linux-xfs@xxxxxxxxxxxxxxx'
Objet : Corrupted large file ?
Hello Everybody,
I am facing some issues with XFS. I do not really know what went wrong and how to diagnose the issue I'm having, but here are the symptoms:
. My kernel is: Linux proxmox1 4.13.13-2-pve #1 SMP PVE 4.13.13-32. It's a 40 cores server that features 160Tb storage (with RAID-6) and 384G RAM. . /dev/sdb1 is a raid array that is roughly 128Tb big . It contains mainly virtual machine disks for a proxmox instance . After a regular halt / restart in which nothing was odd, I could not start anymore one of my VM, kvm timing out.
. Tried a few things, one of which was "head -n 1 <name of the image>.qcow2 . The image being a single 30Tb file.
. The console freezes after that. It seems that I cannot do anything with the qcow2 image. I tried to dd it into another file, but no change. After that, I tried rebooting again, and it told me upon process termination:
"echo 0" > /proc/sys/kernel/hung_task_timeout_secs" disables this message.
Print_req_error: I/O error, dev sdb, sector 241349552640 XFS (sdb1): metadata I/O error: block 0x38818de200 ("xfs_trans_read_buf_map") error 5 numblks 8
. Tried to run after that xfs_repair with default parameters on my /dev/sdb1. Nothing's getting out of that, it's almost like xfs_repair doesn't detect anything. It has ran 3 times now, always with the same output which you can see there:
root@proxmox1:~/xfsprogs-4.17.0# xfs_repair -e /dev/sdb1 Phase 1 - find and verify superblock...
- reporting progress in intervals of 15 minutes Phase 2 - using internal log
- zero log...
- scan filesystem freespace and inode maps...
- 15:30:39: scanning filesystem freespace - 128 of 128 allocation groups done
- found root inode chunk
Phase 3 - for each AG...
- scan and clear agi unlinked lists...
- 15:30:39: scanning agi unlinked lists - 128 of 128 allocation groups done
- process known inodes and perform inode discovery...
- agno = 0
- agno = 15
- agno = 30
- agno = 60
- agno = 45
- agno = 75
- agno = 90
- agno = 105
- agno = 120
- agno = 31
- agno = 46
- agno = 76
- agno = 91
- agno = 106
- agno = 61
- agno = 47
- agno = 121
- agno = 32
- agno = 48
- agno = 77
- agno = 92
- agno = 49
- agno = 33
- agno = 78
- agno = 62
- agno = 34
- agno = 50
- agno = 63
- agno = 35
- agno = 51
- agno = 36
- agno = 93
- agno = 79
- agno = 64
- agno = 37
- agno = 94
- agno = 95
- agno = 65
- agno = 52
- agno = 53
- agno = 66
- agno = 38
- agno = 96
- agno = 54
- agno = 67
- agno = 39
- agno = 55
- agno = 40
- agno = 68
- agno = 56
- agno = 97
- agno = 57
- agno = 69
- agno = 80
- agno = 81
- agno = 98
- agno = 82
- agno = 70
- agno = 122
- agno = 123
- agno = 83
- agno = 58
- agno = 71
- agno = 84
- agno = 99
- agno = 100
- agno = 72
- agno = 85
- agno = 124
- agno = 59
- agno = 73
- agno = 101
- agno = 74
- agno = 86
- agno = 102
- agno = 125
- agno = 87
- agno = 103
- agno = 88
- agno = 126
- agno = 104
- agno = 127
- agno = 41
- agno = 42
- agno = 43
- agno = 44
- agno = 89
- agno = 16
- agno = 17
- agno = 18
- agno = 19
- agno = 20
- agno = 21
- agno = 22
- agno = 23
- agno = 24
- agno = 25
- agno = 26
- agno = 27
- agno = 28
- agno = 29
- agno = 1
- agno = 2
- agno = 3
- agno = 4
- agno = 5
- agno = 6
- agno = 7
- agno = 8
- agno = 9
- agno = 10
- agno = 11
- agno = 12
- agno = 13
- agno = 14
- agno = 107
- agno = 108
- agno = 109
- agno = 110
- agno = 111
- agno = 112
- agno = 113
- agno = 114
- agno = 115
- agno = 116
- agno = 117
- agno = 118
- agno = 119
- 16:01:01: process known inodes and inode discovery - 8320 of 8320 inodes done
- process newly discovered inodes...
- 16:01:01: process newly discovered inodes - 128 of 128 allocation groups done Phase 4 - check for duplicate blocks...
- setting up duplicate extent list...
- 16:01:01: setting up duplicate extent list - 128 of 128 allocation groups done
- check for inodes claiming duplicate blocks...
- agno = 0
- agno = 1
- agno = 2
- agno = 3
- agno = 5
- agno = 6
- agno = 4
- agno = 7
- agno = 8
- agno = 9
- agno = 12
- agno = 10
- agno = 15
- agno = 21
- agno = 16
- agno = 24
- agno = 20
- agno = 18
- agno = 29
- agno = 23
- agno = 28
- agno = 22
- agno = 14
- agno = 27
- agno = 11
- agno = 17
- agno = 13
- agno = 19
- agno = 61
- agno = 39
- agno = 55
- agno = 42
- agno = 31
- agno = 26
- agno = 80
- agno = 46
- agno = 44
- agno = 86
- agno = 35
- agno = 87
- agno = 88
- agno = 25
- agno = 90
- agno = 36
- agno = 32
- agno = 92
- agno = 30
- agno = 69
- agno = 85
- agno = 89
- agno = 45
- agno = 91
- agno = 43
- agno = 38
- agno = 93
- agno = 71
- agno = 37
- agno = 95
- agno = 96
- agno = 41
- agno = 98
- agno = 97
- agno = 76
- agno = 77
- agno = 78
- agno = 79
- agno = 83
- agno = 82
- agno = 81
- agno = 57
- agno = 54
- agno = 52
- agno = 65
- agno = 34
- agno = 64
- agno = 40
- agno = 66
- agno = 49
- agno = 70
- agno = 72
- agno = 63
- agno = 48
- agno = 51
- agno = 56
- agno = 59
- agno = 68
- agno = 60
- agno = 94
- agno = 53
- agno = 73
- agno = 99
- agno = 74
- agno = 58
- agno = 67
- agno = 101
- agno = 62
- agno = 33
- agno = 100
- agno = 102
- agno = 75
- agno = 84
- agno = 50
- agno = 104
- agno = 105
- agno = 47
- agno = 107
- agno = 108
- agno = 111
- agno = 116
- agno = 122
- agno = 123
- agno = 109
- agno = 115
- agno = 113
- agno = 118
- agno = 117
- agno = 119
- agno = 103
- agno = 121
- agno = 120
- agno = 124
- agno = 112
- agno = 125
- agno = 114
- agno = 126
- agno = 110
- agno = 106
- agno = 127
- 16:01:11: check for inodes claiming duplicate blocks - 8320 of 8320 inodes done Phase 5 - rebuild AG headers and trees...
- 16:01:12: rebuild AG headers and trees - 128 of 128 allocation groups done
- reset superblock...
Phase 6 - check inode connectivity...
- resetting contents of realtime bitmap and summary inodes
- traversing filesystem ...
- traversal finished ...
- moving disconnected inodes to lost+found ...
Phase 7 - verify and correct link counts...
- 16:01:13: verify and correct link counts - 128 of 128 allocation groups done done root@proxmox1:~/xfsprogs-4.17.0# echo $?
0
. I was willing to try xfs_scrub, but the kernel cannot do that apparently, so I did not run it at this point.
. Here is my dmesg output regarding XFS
root@proxmox1:~# dmesg | grep -i xfs
[ 4.203326] SGI XFS with ACLs, security attributes, realtime, no debug enabled [ 4.219735] XFS (dm-0): Mounting V5 Filesystem [ 4.268027] XFS (dm-0): Ending clean mount [ 6.819537] XFS (sdb1): Mounting V5 Filesystem [ 7.654455] XFS (sdb1): Starting recovery (logdev: internal) [ 8.806812] XFS (sdb1): Ending recovery (logdev: internal) [ 229.712694] XFS (sdb1): Unmounting Filesystem [ 386.826450] XFS (sdb1): Mounting V5 Filesystem [ 387.397634] XFS (sdb1): Ending clean mount [ 503.408649] XFS (sdb1): Unmounting Filesystem
Here is the output of dmesg after a ls was blocked:
[ 3384.280537] INFO: task ls:21392 blocked for more than 120 seconds.
[ 3384.280592] Not tainted 4.13.13-2-pve #1
[ 3384.280626] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message.
[ 3384.280682] ls D 0 21392 3298 0x00000004
[ 3384.280687] Call Trace:
[ 3384.280700] __schedule+0x3cc/0x860
[ 3384.280788] ? xfs_ilock_attr_map_shared+0x34/0x40 [xfs] [ 3384.280796] schedule+0x36/0x80 [ 3384.280800] rwsem_down_read_failed+0x10a/0x170
[ 3384.280804] call_rwsem_down_read_failed+0x18/0x30
[ 3384.280807] ? call_rwsem_down_read_failed+0x18/0x30
[ 3384.280880] ? xfs_trans_roll+0xc0/0xc0 [xfs] [ 3384.280884] down_read+0x20/0x40 [ 3384.280938] xfs_ilock+0xe0/0x110 [xfs] [ 3384.280984] xfs_ilock_attr_map_shared+0x34/0x40 [xfs] [ 3384.281017] xfs_attr_get+0xb6/0x110 [xfs] [ 3384.281068] xfs_xattr_get+0x4b/0x70 [xfs] [ 3384.281072] __vfs_getxattr+0x57/0x70 [ 3384.281075] vfs_getxattr+0x8d/0xa0 [ 3384.281078] getxattr+0xb0/0x1a0 [ 3384.281083] ? __check_object_size+0xb3/0x190 [ 3384.281087] path_getxattr+0x6c/0xb0 [ 3384.281090] SyS_lgetxattr+0x11/0x20 [ 3384.281094] entry_SYSCALL_64_fastpath+0x1e/0xa9
[ 3384.281097] RIP: 0033:0x7fd487e0634a
[ 3384.281099] RSP: 002b:00007ffed0bedb98 EFLAGS: 00000202 ORIG_RAX: 00000000000 000c0
[ 3384.281103] RAX: ffffffffffffffda RBX: 0000000000000003 RCX: 00007fd487e0634a [ 3384.281104] RDX: 00005638063a2ce0 RSI: 00007fd4880dc262 RDI: 00007ffed0bedc30 [ 3384.281106] RBP: 0000000000000000 R08: 00007fd4880b8c68 R09: 0000000000000110 [ 3384.281107] R10: 00000000000000ff R11: 0000000000000202 R12: 00007fd4884fb270 [ 3384.281109] R13: 00005638063a53c0 R14: 00005638063a2de0 R15: 0000000000000000
Here is a strace output when trying to "cat" into the qcow image:
root@proxmox1:~# strace cat /export/sdb1/brick/images/111/vm-111-disk-1.qcow2
execve("/bin/cat", ["cat", "/export/sdb1/brick/images/111/vm"...], [/* 16 vars */]) = 0
brk(NULL) = 0x561059d8c000
access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory)
mmap(NULL, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f55cfb39000
access("/etc/ld.so.preload", R_OK) = -1 ENOENT (No such file or directory)
open("/etc/ld.so.cache", O_RDONLY|O_CLOEXEC) = 3 fstat(3, {st_mode=S_IFREG|0644, st_size=38304, ...}) = 0 mmap(NULL, 38304, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7f55cfb2f000
close(3) = 0
access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory)
open("/lib/x86_64-linux-gnu/libc.so.6", O_RDONLY|O_CLOEXEC) = 3 read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\0\4\2\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0755, st_size=1689360, ...}) = 0 mmap(NULL, 3795296, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f55cf57a000 mprotect(0x7f55cf70f000, 2097152, PROT_NONE) = 0 mmap(0x7f55cf90f000, 24576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x195000) = 0x7f55cf90f000 mmap(0x7f55cf915000, 14688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f55cf915000
close(3) = 0
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f55cfb2d000 arch_prctl(ARCH_SET_FS, 0x7f55cfb2d700) = 0 mprotect(0x7f55cf90f000, 16384, PROT_READ) = 0 mprotect(0x561058540000, 4096, PROT_READ) = 0 mprotect(0x7f55cfb3c000, 4096, PROT_READ) = 0
munmap(0x7f55cfb2f000, 38304) = 0
brk(NULL) = 0x561059d8c000
brk(0x561059dad000) = 0x561059dad000
open("/usr/lib/locale/locale-archive", O_RDONLY|O_CLOEXEC) = 3 fstat(3, {st_mode=S_IFREG|0644, st_size=1679776, ...}) = 0 mmap(NULL, 1679776, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7f55cf992000
close(3) = 0
fstat(1, {st_mode=S_IFCHR|0600, st_rdev=makedev(136, 2), ...}) = 0 open("/export/sdb1/brick/images/111/vm-111-disk-1.qcow2", O_RDONLY) = 3 fstat(3, {st_mode=S_IFREG|0600, st_size=32218780991488, ...}) = 0 fadvise64(3, 0, 0, POSIX_FADV_SEQUENTIAL) = 0 mmap(NULL, 139264, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f55cf970000 read(3,
Would you happen to have any clue on where to go from now ?
Thank you in advance for the time you'll offer me regarding this !
Kind regards,
Yannick Boursin
