Sounds similar to the issue I spoke of here a week ago. If its the latest Qjackctl built with QT4, its a QT4 problem of yet to be defined origin. Only difference I had, going by your description, was that My CPU was running at 99% and staying there. If you run jack from the command line and see normal Cpu, this would point to the same problem. I have not yeilded a root cause from my Googling. Only some similar instances from other users, not only with Qjackctl & Qsynth, but also Skype and others built with QT4. My fix for now was to revert to an older version of qjackctl. Thanks!
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