Hi!
The glusterfsd.log on all nodes are virtually empty, the only entry on 2008-11-25 reads
2008-11-25 03:13:48 E [io-threads.c:273:iot_flush] sc1-ioth: fd context is NULL, returning EBADFD
on all nodes. I don't think that this is related to our problems.
Regards,
Fred
On 25.11.2008, at 13:17, Basavanagowda Kanur wrote: Fred,
Can you also provide us server logs?
--
gowda
On Tue, Nov 25, 2008 at 4:57 PM, Fred Hucht <fred@xxxxxxxxxxxxxx> wrote: Hi devels!
We consider GlusterFS as parallel file server (8 server nodes) for our parallel Opteron cluster (88 nodes, ~500 cores), as well as for a unified nufa /scratch distributed over all nodes. We use the cluster within a scientific environment (theoretical physics) and use Scientific Linux with kernel 2.6.25.16. After similar problems with 1.3.x we installed 1.4.0qa61 and set up a /scratch for testing using the following script "glusterconf.sh" which runs local on all nodes on startup and writes the two config files /usr/local/etc/glusterfs-{server,client}.vol:
---------------------------------- 8< snip >8 ----------------------------------
#!/bin/sh
HOST=$(hostname -s)
if [ $HOST = master ];then
MASTER_IP=127.0.0.1
HOST_IP=127.0.0.1
HOST_N=0
else
MASTER_IP=192.168.1.254
HOST_IP=$(hostname -i)
HOST_N=${HOST_IP##*.}
fi
LOCAL=sc$HOST_N
###################################################################
# write /usr/local/etc/glusterfs-server.vol
{
cat <<EOF
###
### Server config automatically created by $PWD/$0
###
EOF
if [ $HOST = master ];then
SERVERVOLUMES="scns"
cat <<EOF
volume scns
type storage/posix
option directory /export/scratch_ns
end-volume
EOF
else # if master
SERVERVOLUMES=""
fi # if master
SERVERVOLUMES="$SERVERVOLUMES $LOCAL"
cat <<EOF
volume $LOCAL-posix
type storage/posix
option directory /export/scratch
end-volume
volume $LOCAL-locks
type features/posix-locks
subvolumes $LOCAL-posix
end-volume
volume $LOCAL-ioth
type performance/io-threads
option thread-count 4
subvolumes $LOCAL-locks
end-volume
volume $LOCAL
type performance/read-ahead
subvolumes $LOCAL-ioth
end-volume
volume server
type protocol/server
option transport-type tcp/server
subvolumes $SERVERVOLUMES
EOF
for vol in $SERVERVOLUMES;do
cat <<EOF
option auth.addr.$vol.allow 127.0.0.1,192.168.1.*
EOF
done
cat <<EOF
end-volume
EOF
} > /usr/local/etc/glusterfs-server.vol
###################################################################
# write /usr/local/etc/glusterfs-client.vol
{
cat <<EOF
###
### Client config automatically created by $PWD/$0
###
volume scns
type protocol/client
option transport-type tcp/client
option remote-host $MASTER_IP
option remote-subvolume scns
end-volume
volume sc0
type protocol/client
option transport-type tcp/client
option remote-host $MASTER_IP
option remote-subvolume sc0
end-volume
EOF
UNIFY="sc0"
# leave out node66 at the moment...
for n in $(seq 65) $(seq 67 87);do
VOL=sc$n
UNIFY="$UNIFY $VOL"
cat <<EOF
volume $VOL
type protocol/client
option transport-type tcp/client
option remote-host 192.168.1.$n
option remote-subvolume $VOL
end-volume
EOF
done
cat <<EOF
volume scratch
type cluster/unify
subvolumes $UNIFY
option namespace scns
option scheduler nufa
option nufa.limits.min-free-disk 15
option nufa.refresh-interval 10
option nufa.local-volume-name $LOCAL
end-volume
volume scratch-io-threads
type performance/io-threads
option thread-count 4
subvolumes scratch
end-volume
volume scratch-write-behind
type performance/write-behind
option aggregate-size 128kB
option flush-behind off
subvolumes scratch-io-threads
end-volume
volume scratch-read-ahead
type performance/read-ahead
option page-size 128kB # unit in bytes
option page-count 2 # cache per file = (page-count x page-size)
subvolumes scratch-write-behind
end-volume
volume scratch-io-cache
type performance/io-cache
option cache-size 64MB
option page-size 512kB
subvolumes scratch-read-ahead
end-volume
EOF
} > /usr/local/etc/glusterfs-client.vol
---------------------------------- 8< snip >8 ----------------------------------
The cluster uses MPI over Infiniband, while GlusterFS runs over TCP/IP Gigabit Ethernet. I use FUSE 2.7.4 with patch fuse-2.7.3glfs10.diff (Is that OK? The patch succeeded)
Everything is fine until some nodes which are used by a job block on access to /scratch or, sometimes later, give
df: `/scratch': Transport endpoint is not connected
The glusterfs.log on node36 is flooded by
2008-11-25 07:30:35 E [client-protocol.c:243:call_bail] sc70: activating bail-out. pending frames = 3. last sent = 2008-11-25 07:29:52. last received = 2008-11-25 07:29:49. transport-timeout = 42
2008-11-25 07:30:35 C [client-protocol.c:250:call_bail] sc70: bailing transport
...(~100MB)
(~2 lines for every node every 10 seconds) Furthermore, I find at the end of glusterfs.log:
grep -v call_bail glusterfs.log
...
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] sc0: transport not connected to submit (priv->connected = 255)
...
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] sc87: transport not connected to submit (priv->connected = 255)
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] scns: transport not connected to submit (priv->connected = 255)
2008-11-25 10:05:03 E [fuse-bridge.c:1886:fuse_statfs_cbk] glusterfs-fuse: 1353: ERR => -1 (Transport endpoint is not connected)
On node68 I find
2008-11-24 23:20:12 W [client-protocol.c:93:this_ino_set] sc0: inode number(201326854) changed for inode(0x6130d0)
2008-11-24 23:20:12 W [client-protocol.c:93:this_ino_set] scns: inode number(37749030) changed for inode(0x6130d0)
2008-11-24 23:20:58 E [client-protocol.c:243:call_bail] scns: activating bail-out. pending frames = 3. last sent = 2008-11-24 23:20:12. last received = 2008-11-24 23:20:12. transport-timeout = 42
2008-11-24 23:20:58 C [client-protocol.c:250:call_bail] scns: bailing transport
2008-11-24 23:20:58 E [client-protocol.c:243:call_bail] sc0: activating bail-out. pending frames = 3. last sent = 2008-11-24 23:20:12. last received = 2008-11-24 23:20:12. transport-timeout = 42
2008-11-24 23:20:58 C [client-protocol.c:250:call_bail] sc0: bailing transport
...(~100MB)
only for scns and sc0 and then
2008-11-25 10:01:31 E [client-protocol.c:243:call_bail] sc1: activating bail-out. pending frames = 1. last sent = 2008-11-25 10:00:46. last received = 2008-11-24 23:20:12. transport-timeout = 42
2008-11-25 10:01:31 C [client-protocol.c:250:call_bail] sc1: bailing transport
...(~100MB)
for all nodes, as well as
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] sc0: transport not connected to submit (priv->connected = 255)
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] scns: transport not connected to submit (priv->connected = 255)
2008-11-25 11:23:18 E [socket.c:1187:socket_submit] sc1: transport not connected to submit (priv->connected = 255)
2008-11-25 11:23:18 E [socket.c:1187:socket_submit] sc2: transport not connected to submit (priv->connected = 255)
...
The third affected node node77 says:
2008-11-24 22:07:20 W [client-protocol.c:93:this_ino_set] sc0: inode number(201326854) changed for inode(0x7f97d6c0ac70)
2008-11-24 22:07:20 W [client-protocol.c:93:this_ino_set] scns: inode number(37749030) changed for inode(0x7f97d6c0ac70)
2008-11-24 22:08:07 E [client-protocol.c:243:call_bail] sc10: activating bail-out. pending frames = 7. last sent = 2008-11-24 22:07:24. last received = 2008-11-24 22:07:20. transport-timeout = 42
2008-11-24 22:08:07 C [client-protocol.c:250:call_bail] sc10: bailing transport
...(~100MB)
and then
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] sc0: transport not connected to submit (priv->connected = 255)
...
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] sc87: transport not connected to submit (priv->connected = 255)
2008-11-25 10:00:46 E [socket.c:1187:socket_submit] scns: transport not connected to submit (priv->connected = 255)
As I said, similar problems occurred with version 1.3.x. If these problems cannot be solved, we have to use a different file system, so any help is very appreciated.
Have fun,
Fred
Dr. Fred Hucht <fred@xxxxxxxxxxxxxx>
Institute for Theoretical Physics
University of Duisburg-Essen, 47048 Duisburg, Germany
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--
hard work often pays off after time, but laziness always pays off now
Institute for Theoretical Physics University of Duisburg-Essen, 47048 Duisburg, Germany
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