[EGIT PATCH Series] Cleanups and javadocs

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Here is a number of small enhancements that reduce the number of warnings
displayed and raises the standard on comments. We now get javadoc comments
on all public and protected methods which hopefully will make it slighly
easier to get on the train for those interested in helping out with Egit/Jgit.

Disabling the else-warning is probably fairly uncontroversial. Disabling some
warning about boxing/unboxing of integers might be as might be requiring
javadoc comments.

-- robin


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