Hi there, I'm seeing a strange thing with multi-level submodules. Not sure what's going on, but it feels like a bug. (I'm doing this on git "2.45.2.windows.1"). For a while, I've been globally setting the recursive and active config options: git config --global submodule.recurse true git config --global submodule.active . This has the benefit that I don't need to "git submodule init" new modules since everything is active. The weirdness happens when there are submodules within a submodule. I can reproduce it by just creating 3 git repositories (I have only tried with GH hosted repos, maybe its different if done locally). Each repo has a directory within it, and that directory is a submodule of the next one. top -> middle -> bottom Now, if I don't set the global config above, I can: "git clone --recurse-submodules <PATH>" to get everything. Or: "git clone <PATH>", "cd", "git submodule init", "git pull" etc. to again get everything. But if I set the global options, I can do: "git clone <PATH>" to clone the top level. "cd top" to go in there. "git pull" to update everything, including submodules. But while cloning "middle", it gives me an error: fatal: not a git repository: ../../.git/modules/middle/modules/bottom Something is getting confused and thinks there are worktrees involved: ".git/modules/middle/config" has "worktree" line in the [core] section (this appears to be normal). ".git/modules/middle/modules/bottom/config" is not a repository, but just a "[core] worktree" section (definitely not normal). This all works fine if there is only one level of submodules (top->middle). Any ideas? Regards, -Jeppe