Hi all, I think I've reproduced this problem on v2.36.1 and main. First, remove any existing commit graphs: $ rm -rf .git/objects/info/commit-graph* Generate a commit graph without GDA2: $ git -c commitGraph.generationVersion=1 commit-graph write Peff's bad commit graph included bloom filters, so let's update the commit graph to include them and add GDA2: $ git -c commitGraph.generationVersion=2 commit-graph write --changed-paths The commit graph is now broken: $ git rev-list --all fatal: commit-graph requires overflow generation data but has none The header has a GDA2 section, but no GDO2: $ xxd .git/objects/info/commit-graphs/*graph | head 00000000: 4347 5048 0101 0700 4f49 4446 0000 0000 CGPH....OIDF.... 00000010: 0000 0068 4f49 444c 0000 0000 0000 0468 ...hOIDL.......h 00000020: 4344 4154 0000 0000 0015 43b4 4744 4132 CDAT......C.GDA2 00000030: 0000 0000 003b 8270 4544 4745 0000 0000 .....;.pEDGE.... 00000040: 003f c24c 4249 4458 0000 0000 003f c3cc .?.LBIDX.....?.. 00000050: 4244 4154 0000 0000 0044 03a8 0000 0000 BDAT.....D...... 00000060: 0000 0000 0049 79df 0000 010e 0000 0216 .....Iy......... 00000070: 0000 031f 0000 042f 0000 0535 0000 0623 ......./...5...# 00000080: 0000 0730 0000 086d 0000 096d 0000 0a8c ...0...m...m.... 00000090: 0000 0b8e 0000 0c96 0000 0d9c 0000 0ea2 ................ Viewing the GDA2 block, the overflow bit is set for virtually all of the commits: $ xxd -s 0x003b8270 .git/objects/info/commit-graphs/*.graph | head 003b8270: 8000 0000 8000 0001 8000 0002 8000 0003 ................ 003b8280: 8000 0004 8000 0005 8000 0006 8000 0007 ................ 003b8290: 8000 0008 8000 0009 8000 000a 8000 000b ................ 003b82a0: 8000 000c 8000 000d 8000 000e 8000 000f ................ 003b82b0: 8000 0010 8000 0011 8000 0012 8000 0013 ................ 003b82c0: 8000 0014 8000 0015 8000 0016 8000 0017 ................ 003b82d0: 8000 0018 8000 0019 8000 001a 8000 001b ................ 003b82e0: 8000 001c 8000 001d 8000 001e 8000 001f ................ 003b82f0: 8000 0020 8000 0021 8000 0022 8000 0023 ... ...!..."...# 003b8300: 8000 0024 8000 0025 8000 0026 8000 0027 ...$...%...&...' Stepping though, it looks like this is the scenario: compute_generation_numbers correctly calculates the generation, e.g.: { graph_pos = 0, generation = 1502820840 } Because the existing commit graph did not include generation data, graph.read_generation_data is 0. When compute_bloom_filters executes, it will call fill_commit_graph_info which checks that value and falls back to the older generation calculation if false: if (g->read_generation_data) { offset = (timestamp_t)get_be32(g->chunk_generation_data + sizeof(uint32_t) * lex_index); if (offset & CORRECTED_COMMIT_DATE_OFFSET_OVERFLOW) { if (!g->chunk_generation_data_overflow) die(_("commit-graph requires overflow generation data but has none")); offset_pos = offset ^ CORRECTED_COMMIT_DATE_OFFSET_OVERFLOW; graph_data->generation = item->date + get_be64(g->chunk_generation_data_overflow + 8 * offset_pos); } else graph_data->generation = item->date + offset; } else graph_data->generation = get_be32(commit_data + g->hash_len + 8) >> 2; This re-writes the commit data to: { graph_pos = 0, generation = 17631 } The smaller generation value underflows when the commit date is subtracted from it by write_graph_chunk_generation_data, causing the overflow flag to be set: static int write_graph_chunk_generation_data(struct hashfile *f, void *data) { struct write_commit_graph_context *ctx = data; int i, num_generation_data_overflows = 0; for (i = 0; i < ctx->commits.nr; i++) { struct commit *c = ctx->commits.list[i]; timestamp_t offset; repo_parse_commit(ctx->r, c); offset = commit_graph_data_at(c)->generation - c->date; display_progress(ctx->progress, ++ctx->progress_cnt); if (offset > GENERATION_NUMBER_V2_OFFSET_MAX) { offset = CORRECTED_COMMIT_DATE_OFFSET_OVERFLOW | num_generation_data_overflows; num_generation_data_overflows++; } hashwrite_be32(f, offset); } return 0; } We've already decided by this point to skip writing the overflow chunk based on compute_generation_numbers, so the commit graph is now invalid.