If one creates a new repository, makes a new branch, adds a submodule, makes local changes to that submodule, then switches to another branch, it seems that git can silently remove those local changes. Here's an example (the repositories involved are irrelevant other than they're small!): $ git clone https://github.com/ltratt/supuner/ $ cd supuner $ git submodule add https://github.com/ltratt/extsmail extsmail $ git checkout --recurse-submodules -b b $ git commit -m "add submodule" . At this point make a local change to extsmail/README.md and confirm that git has noticed that something in the submodule has changed: $ git status On branch b Changes not staged for commit: (use "git add <file>..." to update what will be committed) (use "git restore <file>..." to discard changes in working directory) (commit or discard the untracked or modified content in submodules) modified: extsmail (modified content) no changes added to commit (use "git add" and/or "git commit -a") then change branch (in the supuner repository, not extsmail!): $ git checkout --recurse-submodules master The switch of branch succeeds without warning me that I have changes in my submodule. But then: $ git status On branch master Your branch is up to date with 'origin/master'. nothing to commit, working tree clean My local changes to the submodule have disappeared entirely. Switching back to `b` does not restore my changes: $ git checkout --recurse-submodules b On branch b nothing to commit, working tree clean This happens on 2.26.2 and the current master. AFAICS this only happens because the master branch does not yet have the submodule registered in it. If it does, "checkout --recurse-submodules" maintains my local changes in the submodule across the branch switch. Laurie -- Personal http://tratt.net/laurie/ Software Development Team http://soft-dev.org/ https://github.com/ltratt http://twitter.com/laurencetratt