Hi, I ran into an issue where git stash seems to be losing modified content from submodules without warning, if submodule.recurse is true. See below for an example: 1. enable submodule.recurse: ~ $ git config --global submodule.recurse true 2. create the repo to be used as a submodule: ~ $ git init sub Initialized empty Git repository in /home/jakob/sub/.git/ ~ $ cd sub/ ~/sub $ touch sub.txt ~/sub $ git add sub.txt ~/sub $ git commit -m initial [master (root-commit) 651a90c] initial 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 sub.txt ~/sub $ cd .. 3. create the main repo, add sub as a submodule: ~ $ git init main Initialized empty Git repository in /home/jakob/main/.git/ ~ $ cd main/ ~/main $ touch main.txt ~/main $ git add main.txt ~/main $ git submodule add ../sub/ Cloning into '/home/jakob/main/sub'... done. ~/main $ git commit -m initial [master (root-commit) 2f9f4e8] initial 3 files changed, 4 insertions(+) create mode 100644 .gitmodules create mode 100644 main.txt create mode 160000 sub 4. make *both* main and sub dirty (if main is clean, stash does nothing): ~/main $ echo changes > main.txt ~/main $ echo changes > sub/sub.txt ~/main $ git diff sub/ Submodule sub contains modified content 5. git stash and git stash pop: ~/main $ git stash Saved working directory and index state WIP on master: 2f9f4e8 initial ~/main $ git stash pop On branch master Changes not staged for commit: (use "git add <file>..." to update what will be committed) (use "git checkout -- <file>..." to discard changes in working directory) modified: main.txt no changes added to commit (use "git add" and/or "git commit -a") Dropped refs/stash@{0} (00a38b73407e7e3041c9459ef6d61bc90940b91f) ~/main $ git diff sub/ ~/main $ At this point, I can't seem to find any way to retrieve the changes made to sub/sub.txt. Thanks, Jakob